1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCCTTTGGCACAAGATTGTGTTGAAAGGATTAAATCTGCAATAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCTTATCTGgtataatcctctgtggttttcaaacttttctcaaaatctgatcttgtcctactgactgggagacttgattgacaacaatatttcccttctggcttttgtc...
species | Glycine max |
transcript | GLYMA09G38520.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCAGAAACCTTATCTG ATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGEST: gi|13790379|gb|BG652970.1|BG652970
genomic: GCAGAAACCTTATCTGgtataatcct ... gggcacccagATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTG
EST: GCAGAAACCTTATCTG ATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGEST: gi|13790421|gb|BG653012.1|BG653012
genomic: GCAGAAACCTTATCTGgtataatcct ... gggcacccagATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTG
EST: GCAGAAACCTTATCTG ATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTG
genomic: GCAGAAACCTTATCTGgtataatcct ... gggcacccagATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTTGGCACAAGATTGTGTTGAAAGGATTAAATCTGCAATAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCTTATCTGgtataatcctctgtggttttcaaacttttctcaaaatctgatcttgtcctactgactgggagacttgattgacaacaatatttcccttctggcttttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccttc