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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGgttcaataattatagttatcccgagcagttataagaaaaactagtattttttttgttgaagtggtatttgtttccgagcag

Basic information

species Glycine max
transcript GLYMA09G36770.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36770.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S237_60V6.2 (Physcomitrella patens), 5'ss of exon 9
GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGgttc-aataattatagttatcccga-gcagttataa--gaaaaactagt--attttttttgttga--agtggtatttgtttccgagcag------
|| ||||||||||||||||||||||| || |||||  |||| || ||||| ||||| || ||||| |||||  | ||     |  ||||  |||    || | |  | || ||||   ||  |||  ||  |    |||   |||  ||      || |  ||| ||        
GTGATGTGTCCAACATGTCTCTGCACAGGCATGGCACTGGCTAGTGAACACGATCCTCGCATTGACCCTTTCCAgtaagaactggaatacctatttgaatactgctgtagatatacttgagcaacatgttgaccaatttcaatgaccagcaaagcttata-ccgggctctattct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31310538|gb|CD395741.1|CD395741
EST:     ATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAG                         GTTCAATAATTTGAAAGTGGTATTTGTTTCCGTGGCGGAGAAATGGATTTT
genomic: ATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGgttcaataat ... ttccgagcagGTTCAATAATTTGAAAGTGGTATTTGTTTCCGTGGCGGAGAAATGGATTTT