1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcctttcctttctatcctatctatttccactttagcttatgttgtgttctaaacaaaaaaacaaccactaatgttttcgctcttttcatttgaaagatactttgcgaaactttcattcaaggaagatctaaaatattcaagtctgatttttcttttccttttattag
species | Glycine max |
transcript | GLYMA09G35050.4 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGEST: gi|9898765|gb|BE607733.1|BE607733
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
EST: TGNGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT GGCTCTGCTAG-AATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCCAAGEST: gi|37995321|gb|CF806910.1|CF806910
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCC-AAG
EST: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGEST: gi|7589608|gb|AW705379.1|AW705379
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
EST: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGEST: gi|33389751|gb|CA852958.1|CA852958
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
EST: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcctttcctttctatcctatctatttccactttagcttatgttgtgttctaaacaaaaaaacaaccactaatgttttcgctcttttcatttgaaagatactttgcgaaactttcattcaaggaagatctaaaatattcaagtctgatttttcttttccttttattag
- - - - - - GGAGAA