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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATGCTGAGAGATCCTATCATCAGCATGTCCTTGTTATTCTAGAGAAACTATATACTGAGgttagtcaccatatagcctgaatgcctgattctttttttcaaattggaagaataattactagcttctggcatgatattctgaccatttttttgggtgctgatcaaattaataatctgtaccttaaattggattttttggagttag

Basic information

species Glycine max
transcript GLYMA09G34950.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284902|gb|AW597389.1|AW597389
EST:     GATCCTATCATCAGCATGTCCTTGTTATTCTAGAGAAACTATATACTGAG                         ATAATTGAGGACAGACAACCAAAAGAGGCTACATCATTTACACTGCCAAAA
genomic: GATCCTATCATCAGCATGTCCTTGTTATTCTAGAGAAACTATATACTGAGgttagtcacc ... ttggagttagATAATTGAGGACAGACAACCAAAAGAGGCTACATCATTTACACTGCCAAAA
EST: gi|151395193|gb|EV265064.1|EV265064
EST:     GATCCTATCATCAGCATGTCCTTGTTATTCTAGAGAAACTATATACTGAG                         ATAATTGAGGACAGACAACCAAAAGAGGCTACATCATTTACACTGCCAAA-
genomic: GATCCTATCATCAGCATGTCCTTGTTATTCTAGAGAAACTATATACTGAGgttagtcacc ... ttggagttagATAATTGAGGACAGACAACCAAAAGAGGCTACATCATTTACACTGCCAAAA
EST: gi|13479404|gb|BG508747.1|BG508747
EST:     GATCCTATCATCAGCATGTCCTTGTTATTCTAGAGAAACTATATACTGAG                         ATAATTGAGGACAGACAACCAAAAGAGGCTACATCATTTACACTG
genomic: GATCCTATCATCAGCATGTCCTTGTTATTCTAGAGAAACTATATACTGAGgttagtcacc ... ttggagttagATAATTGAGGACAGACAACCAAAAGAGGCTACATCATTTACACTG