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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGGTTTGGCTTTCATGGAATTTTCACTTGATGACCGCATCCCGAAGTCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctatattcattctttctgaatacaacaacaaagccttatctcattaggtgagatcggctacatgaattacatgatatcattaagctcagttaaag...

Basic information

species Glycine max
transcript GLYMA09G34300.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193692684|gb|FK632843.1|FK632843
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|193587684|gb|FK542173.1|FK542173
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|193324857|gb|FK290169.1|FK290169
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGG
EST: gi|193487871|gb|FK453132.1|FK453132
EST:     TGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|193367130|gb|FK329842.1|FK329842
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGG
EST: gi|51335235|gb|CO979101.1|CO979101
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|193550516|gb|FK508407.1|FK508407
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|208211994|gb|GE014847.1|GE014847
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAA
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAA
EST: gi|193638337|gb|FK585403.1|FK585403
EST:     CTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCAACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: CTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCA-CCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|193550260|gb|FK506709.1|FK506709
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|193312135|gb|FK275611.1|FK275611
EST:     CCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|193542776|gb|FK504125.1|FK504125
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|308098251|gb|HO759992.1|HO759992
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|9986960|gb|BE661068.1|BE661068
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAANGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|207705256|gb|GD687288.1|GD687288
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGTG
EST: gi|151395784|gb|EV265661.1|EV265661
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCA
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCA
EST: gi|193358135|gb|FK319721.1|FK319721
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGGCCTGAATGAGGG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGG-CCTGAATGAGGG
EST: gi|193380808|gb|FK346091.1|FK346091
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGG
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGG
EST: gi|193356830|gb|FK322252.1|FK322252
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         A
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccag-
EST: gi|193356830|gb|FK322252.1|FK322252
EST:     TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAA                         A
genomic: TCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctata ... gatgtcccag-
EST: gi|193665477|gb|FK613467.1|FK613467
EST:     CTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGTCCAA                         GTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGT
genomic: CTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGG-CCAAgtaagctata ... gatgtcccagGTATCAACTCATAAGGGTGAATGCCAAGGGCCTGAATGAGGGCTGCAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAATGGTTTGGCTTTCATGGAATTTTCACTTGATGACCGCATCCCGAAGTCTGATACTTATTCGGAGAACCTGGATGCTCAGCTGCCACCATTGGCCAAgtaagctatattcattctttctgaatacaacaacaaagccttatctcattaggtgagatcggctacatgaattacatgatatcattaagctcagttaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC