1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggcttaaaattgaatattcattcaggttgaccgtgtacatttcaaacacaattatttttcatatgctccctctattgaagcttgtgatttacacatgaattgcag
species | Glycine max |
transcript | GLYMA09G31760.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAG GTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAAEST: gi|23731586|gb|BU763924.1|BU763924
genomic: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggct ... tgaattgcagGTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAA
EST: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAG GTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAAEST: gi|207840606|gb|GD812269.1|GD812269
genomic: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggct ... tgaattgcagGTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAA
EST: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCT-GATCAAGTGAACCAG GTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAAEST: gi|33389673|gb|CA852880.1|CA852880
genomic: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggct ... tgaattgcagGTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAA
EST: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAG GTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAA
genomic: TTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggct ... tgaattgcagGTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCCATAGTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggcttaaaattgaatattcattcaggttgaccgtgtacatttcaaacacaattatttttcatatgctccctctattgaagcttgtgatttacacatgaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT