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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagttttattgctggtttagtacctttttgtgttaaaaatttcttcctcccaatattaggaaaaaaaatttacactcattttgaagcaagactgagtc...

Basic information

species Glycine max
transcript GLYMA09G28650.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G28650.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 5'ss of exon 7
CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagt----------tttattgctggtttagtacctttttgtgttaaaaatttcttcctc----ccaatattaggaaaaaaaatttacactcattttgaagcaagactgagtc
|||| | ||||||| | ||||||||| | ||||||||||||||||||||||||| | |||| |   | || |||||||           ||||| |   | | | |  |||| || |  | ||| | |   ||     |  | ||      |   ||||        | |     ||  | |    
CATACACCAAAGCTCTTGAGGATGCTTTAGCTGTCCTTGACAAAATTGCAATGCATGTTGACGTGAATGACCgtaagtatatgtcaagcttattacaaatattgcaaattttagtttggagaatctatgtatcgtcttctgtgtttttgttactgatttgagtgagatgtaccataatgcag----

upper sequence: GLYMA09G28650.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G069765_T02 (Zea mays), 5'ss of exon 7
CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagttttattgctggtttagtacctttttgtgttaaaaattt-cttcctcccaatattaggaaaaaaaatttacactcattttgaagcaagactgagtc-----------------------------------------
|||||| ||||||  | || |||||||||||||| |||||||||||||||||| || ||||||   | |||||||||||| |  |      ||      ||||||  |  |   |  |    |  |||| | |    ||  |  |  |   | | ||| |   |   || ||                                          
CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGGCTGTTGATGTGAATGATCgtaagttt-acagtgaacata----tattttgtactggatcctggcactttgtcaatgtcacaggaattagct--cttccctcttgcatacaccatgtgttacacaattagactgatgtcaccaaatatactgttaatgcag

upper sequence: GLYMA09G28650.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G175510_T01 (Zea mays), 5'ss of exon 7
CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagttt--------------tattgctggtt----------------tagtacctttttgtgttaaaaatttcttcctcccaatatta-ggaaaaaaaatttacactcatttt---gaagcaagactgagtc---
|||| | ||||||  | || |||||||||||||| ||||||||||||||||||||  ||||||   | ||||||||||||              | || |||| |                | | || ||| ||  |||    |||| || | |    | || |    ||||| ||| ||| || |    |||   |   | | |    
CATACACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGCCGGTTGATGTGAATGATCgtaagtttgcagtgaaatatatttttcctggatccgggcacttcaccaatggcacatttgtgctttagccctttcctcttgcgtgcactatgtgttaaaaaattatactgatgtcaccgaatttaccattaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208048655|gb|GD847558.1|GD847558
EST:     TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATC                         GAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
genomic: TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
EST: gi|193324828|gb|FK288068.1|FK288068
EST:     CCTATTGATGCTCAGGATC                         GAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
genomic: CCTATTGATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
EST: gi|208176087|gb|GD974318.1|GD974318
EST:     TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATC                         GAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
genomic: TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
EST: gi|209725416|gb|BW658278.1|BW658278
EST:     TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATC                         GAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
genomic: TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
EST: gi|193333955|gb|FK301343.1|FK301343
EST:     TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATC                         GAGGTATAATGCTGGGGCTAGTAAAAAG
genomic: TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTAGTAAAAAG
EST: gi|207717196|gb|GD697690.1|GD697690
EST:     TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATC                         GAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG
genomic: TGCTATTGCTGTCCTTGACAAAATTGCAATGCCTATTGATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACAG