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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGAGCCTGATGTTCAACCTAGTGATTTATGTACACGCCGTGAATATGCTCGCTGGTTGGTGTCTGCTAGCAGTGCTCTTTCAAGgtagtaatttatttctacatatgtgaataacaaaatgtgttacatatgtaatatttggcattacatgtgactttctggtaacttgttag

Basic information

species Glycine max
transcript GLYMA09G25200.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCATTGAGCCTGATGTTCAACCTAGTGATTTATGTACACGCCGTGAATATGCTCGCTGGTTGGTGTCTGCTAGCAGTGCTCTTTCAAGgtagtaatttatttctacatatgtgaataacaaaatgt-gttacatatgtaatatttggcattacatgtgactttctggtaacttgttag--
|| |||||  | |||| ||  |||   ||||||||||||||||||||||  ||||| ||| |||| ||||| |||| | |||| || |||||   ||  |    |   | |   | |    |||  | || | |||| | |  |     |  || ||  | | |||  | | | ||||   
GTTATTGAATCCGATGCTCTGCCTTACGATTTATGTACACGCCGTGAATTCGCTCGTTGGGTGGTTTCTGCAAGCAATACTCTATCGAGgtaactatcaaaaaatctctttcctactcttgaaacattgtgaaatatttcac-tgccttacaacgtgaaaatatct--tcattggttatag

upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 5
GTCATTGAGCCTGATGTTCAACCTAGTGATTTATGTACACGCCGTGAATATGCTCGCTGGTTGGTGTCTGCTAGCAGTGCTCTTTCAAGgtag--taatttatttctacatatgtgaataacaaaatgt-gttacatatgtaatatttggcattacatg-tgactttctggtaacttgttag-------
||||| || ||||||||||||||||| ||| |||||||||| ||||| | |||||| |||||||| ||||| || |||| ||||||||||||    |  ||  |  |   | | |  |||||    | | | ||       ||   |  | || | ||  | ||      |||   ||           
GTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAGgtataccatcttgctcttctttgtttctataacttcttcttgataggcgaagaaaggtatgtataatataataacaaaaaagtacactgaagtacacagg