Sequence
atgc intronic sequence ATGC exonic sequenceATCTGTAAAAGATGTTCTTCAAAGATCTGGGATTAAAGTTAAACTTGACGACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGgtttggtgtaaacttgaacggaaattcaatttctgggaccaaataatgcgcattgctttgtctcatgctgcaggatcttatcctgttttgagtatctgattatatttatatcatttacttcttcatatttcag
Basic information
species | Glycine max |
transcript | GLYMA09G24670.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTGTAAAAGATGTTCTTCAAAGATCTGGGATTAAAGTTAAACTTGACGACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGgtttggtgtaaacttgaacggaaattcaatttctgggaccaaataatgcgcattgctttgtctcatgctgcaggatctt-atcctgttttgagtatctgattatatttatatcatttacttcttcatatttcag
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ATCAGTGAAAGAAGCTCTCCAAACTGCTGGTGTTAGAGTTAAACTTGATGACACAGATCAAAGAACCCCAGGATGGAAGTTCAATTTCTGGGAAATGAAGgttcgtaactatcttagaaaaaaacaca--cactagaatca----------------ttttctggagtgaaaagattttcgtgatatttcaagc-tcttataatttacatttggtttgaacctttggtttgtag
upper sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g00960.t01 (Vitis vinifera), 5'ss of exon 8
ATCTGTAAAAGATGTTCTTCAAAGATCTGGGATTAAAGTTAAACTTGACGACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGgtttggtgtaaacttgaacggaaattcaatttctgggaccaaataatgcgcattgctttgtctcatgctgcaggatcttatcctgttttgagtatctgattatatttatatcatttacttcttcatatttcag
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ATCTGTGACAGAAGTTTTAAAATCTGCAAATATTAAAGTTAAAGTTGATGACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGgtctg-tacattcttgaatcaatcctcgcat-----aacctagtgttatcaaaggcaattgcttgggtcgcctaggcc-atcaggtcaggtggggcagataaaactc--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192300331|gb|FG988808.1|FG988808EST: ACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAG GGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGGCTAGTGGAAGT
genomic: ACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGgtttggtgta ... catatttcagGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGGCTAGTGGAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTGTAAAAGATGTTCTTCAAAGATCTGGGATTAAAGTTAAACTTGACGACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGgtttggtgtaaacttgaacggaaattcaatttctgggaccaaataatgcgcattgctttgtctcatgctgcaggatcttatcctgttttgagtatctgattatatttatatcatttacttcttcatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA