Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatatcttgtccaatgactatgtaagcaattgtttacatgacaagattttatagttactgatcttggatgtgaacag

Basic information

species Glycine max
transcript GLYMA09G23250.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 10
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatat--cttgtccaatgactatgtaagcaattgtttacatgacaagattttatagttactgatcttggatgtgaacag-------------------
|||| |  ||||| |||||| |||||||| ||||||| |||||| |||||| ||| ||||| ||||||||||| |||||||| || |||||  | || ||||| |||    |  | | |||  | |||   |  ||| |||  | |     ||||||    |   |  ||  || | || |                    
ATTACACAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGTTGAATAACAAAGATCCAGAATACCGAAACGGAAAGCTTGTCATATCTTCTAAGAGgtagatacaattgtttctatgcttgtgtcttct-ttgcttat-ttatttatttttatttgaaacaaagttccatataaatattcttgtggccctggtacag

upper sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 10
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatat--cttgtccaatgactatgtaagc--aattgtttacatgacaagattttatagttactgatcttggatgtgaacag-------------------
| || || ||||| |||||| |||||||| ||||||| ||||||||||||| ||| ||||| |||||||||||||||||||| || |||||  |||| ||||| |||    |  | | |||  | |||   |  |  |  ||   | |     |||||   | |      ||  || | |                       
ACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgtttctatgcttctgtcttctcagcttctttatttatttagttttagtttaaacagagttccatataactcatcttgtggccctggtacag

upper sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 9
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatatc-ttgtcca-atgactatgta----agcaattgtttacatgacaagattttatagttactg--atcttggatgtga-acag
|  | || ||||| |||||| |||||||| ||||||| ||||||||| ||| |||  |||| |||||||||||||||||||| || |||||  |||| ||||| |||   |||     |||  | |||     |||   |  ||  | |||||  || |||| | |||   ||  |||   ||  ||||
ACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgcttgcatgcttgtgtcttttagcttcttattgta-gacaaagttctata-taactacaattgtggccctggtacag