1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTCATACTCTCTTAAAAGGTTTGGAAAAAATAGCTGCAAGTGCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgacatctttttctttatgtaattatttttagttttttgttttgtaataaggatcatgtatttataatgattattttgaacatcgttgcag
species | Glycine max |
transcript | GLYMA09G15980.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAG TGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGAEST: gi|18848623|gb|BM567768.1|BM567768
genomic: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgac ... atcgttgcagTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGA
EST: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAG TGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGAEST: gi|58014993|gb|CX701735.1|CX701735
genomic: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgac ... atcgttgcagTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGA
EST: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAG TGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGAEST: gi|57574329|gb|CX547304.1|CX547304
genomic: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgac ... atcgttgcagTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGA
EST: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAG TGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGAEST: gi|254322136|gb|GR837550.1|GR837550
genomic: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgac ... atcgttgcagTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGA
EST: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAG TGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGAEST: gi|27426055|gb|CA937575.1|CA937575
genomic: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgac ... atcgttgcagTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGA
EST: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAG TGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGA
genomic: GCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgac ... atcgttgcagTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATACTCTCTTAAAAGGTTTGGAAAAAATAGCTGCAAGTGCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGgtttgatgacatctttttctttatgtaattatttttagttttttgttttgtaataaggatcatgtatttataatgattattttgaacatcgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT