1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACAgtaagtacactttgcttgagatttttttgtcttcctctctctactgctgcctttatgcatgtaccataaatcatattgcttctgcagtgatctttaaata...
species | Glycine max |
transcript | GLYMA09G10830.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACA CTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGAEST: gi|21994464|gb|BQ785992.1|BQ785992
genomic: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACAgtaagtacac ... gatctttcagCTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGA
EST: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACA CTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGAEST: gi|207826535|gb|GD798218.1|GD798218
genomic: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACAgtaagtacac ... gatctttcagCTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGA
EST: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACA CTGCAGCTGCAAAGGAATGAGGTAATTGCATTGAACGAACCTTCTCAATCGEST: gi|254313613|gb|GR831242.1|GR831242
genomic: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACAgtaagtacac ... gatctttcagCTGCAGCTGCAAAGGAATGAGGTAATTGCATTGA-CGAACCTTCTCAATCG
EST: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACA CTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGA
genomic: CATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACAgtaagtacac ... gatctttcagCTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACAgtaagtacactttgcttgagatttttttgtcttcctctctctactgctgcctttatgcatgtaccataaatcatattgcttctgcagtgatctttaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc