Sequence
atgc intronic sequence ATGC exonic sequenceAAGCTATCCTCGCACACCTTCAGTTCGAAAGGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcactatccgttaacaaatttggggttcatctctacccttttcccctttaatttctattcatgaattctgctatattctgatttataacataattctgttcataattgcag
Basic information
species | Glycine max |
transcript | GLYMA09G07520.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 8
AAGCTATCCTCGCACACCTTCAGTTCGAAAGGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcactatccgttaacaaatttggggttcatctctacccttttcccctttaatttctattcatgaattctgctatattctgatttataacataattctgtt-cataattgcag
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AAGTTATCCACGTTCTGCATGTATACGGAAGGGTTGGGTGGCTCGTCAATTTGCAAAACTGGTCATATTCACCGGATTCATGGGATTTATAATAGAACAAgta---------cgttttcacatcttgcttt---attagttttccttggtgaaaatcatcatccctgcgt--tgtcaccacttgacttc--atgttcttttgttacattttggcag
upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 8
AAGCTATCCTCGCACACCTTCAGTTCGAAAGGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcactatccgttaacaaatttggggttcatctctacccttttcccctttaatttctattcatgaattctgctatattctgatttataacataattctgttcataattgcag
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AAGCTATCCTCGCAGCACATGCATTCGGAAGGGTTGGGTCTTTCGCCAATTTGTCAAGTTGGCAATATTTACAGGTGTTATGGGATTTATAATAGAACAGgtaagc-ttcttttcacatacgtttccgagctatttct--tttttttcttcagaaaattgatgaaggtattctaacatggtct---ttttgacattattttgcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120493969|gb|EH222136.1|EH222136EST: TTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAA TATATGAATCCTATTGTACAAAACTCAACTCATCCTTTGAAGGGAAACCTT
genomic: TTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcacta ... ataattgcagTATATGAATCCTATTGTACAAAACTCAACTCATCCTTTGAAGGGAAACCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCTATCCTCGCACACCTTCAGTTCGAAAGGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcactatccgttaacaaatttggggttcatctctacccttttcccctttaatttctattcatgaattctgctatattctgatttataacataattctgttcataattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT