Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacttaacttttcttgattcagtctgaagtaccactctgattgtttagttcttaaagataatggtttttcttatatttggtcttctggtag

Basic information

species Glycine max
transcript GLYMA09G07140.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07140.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g02150.t01 (Vitis vinifera), 5'ss of exon 10
AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacttaacttttcttgattcag--tctgaagtaccactctgat--tgtttagttcttaaagataatggttt--ttcttatatttggtcttctggtag----------
||||| ||||| ||||| |||||||||||  ||||||   |   ||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||| |    |  ||||  |  |   | || | |  |  |  | |  |||||     | |   ||  |  |    || |||| |||  || | |   |           
AGAAATTTGGTCAAGTTAATTGGTATATGTACAGAGGAGCGTACCCGCTGCTTAGTGTATGAACTCATTCCAAATGGCAGTGTGGAGTCCCATTTACATGgtattattttcctcttagtataagttttgcattggctgtgaggtgatgttttccattgatcaattctcatcgaatttttatgtttattcctttttcatttgctctcag

upper sequence: GLYMA09G07140.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S43_35V6.1 (Physcomitrella patens), 5'ss of exon 1
---AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacttaacttttct---tgattcagtctgaagtaccactctgattgtttagttcttaaagataat--ggtttttctta--tatttggtcttctggtag-
    | ||| | || | ||| |||||||| ||| | |||  ||  ||| | ||  | ||||||||||||||  | ||||| ||||||||||| ||||| |||||||  ||| | |  |   ||| | | |    || | |    |   || ||||     |  |  | |  |     ||| |  ||    |   |   |||  
CATCGGAACCTTGTGAGGTTAATTGGTATCTGCACCGAG--CAAATTC-GATGCTTGGTTTATGAACTCATAACGAATGGGAGTGTGGAATCTCATTTGCATGgtatgtaattctgttcactgaataacttgtcagaatcttcttcgatgattagagtcaagtgtgagtccgaaccgtctgaaataccaagaaattctgtaca

upper sequence: GLYMA09G07140.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S95_115V6.1 (Physcomitrella patens), 5'ss of exon 6
---AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacttaacttttcttgat--tcagtctgaagtaccactctgatt---gtttagttcttaaagataatggtttttcttatatttggtcttctggtag-------------------
    | ||| | || | | | ||||| || ||| | ||||  |   | || ||| | |||||||| || ||| ||||||||||||||||||| |||||||||||||  || ||     |      || | |   ||||  || | | |      |   |  | ||||||  |   |    |||   || | |  |  ||                    
CATCGCAACCTTGTGAGGCTAATTGGCATCTGCACTGAGGAAA---TACGATGTTTGGTTTATGAGCTTATTACAAATGGCAGTGTGGAATCTCATTTACATGgtatgtacctgaaaatagagaccacttttgtgtacttctttaaatcgcacgtcacttgtgaagatatggcggtgaactatggctgatttaatcatattttctcttgtaatcctcag

upper sequence: GLYMA09G07140.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S343_14V6.1 (Physcomitrella patens), 5'ss of exon 6
---AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacttaacttttcttgattcagtctgaagtaccactctgattgttt--agttcttaaagataat--ggtttttct-tatatttgg-tcttctggtag--
    ||||| | || ||| | ||||| || ||| | |||   |   | || ||| | ||||||||||||||  | ||||||||||||||||| ||| | |||||||| ||  | |  |   |   | |         |||    |||| |  ||| ||    ||| ||  | ||| | | |   | ||  || |||  |    
CATCGAAACCTTGTGAAGCTAATTGGCATCTGCACCGAG---AAAATTCGGTGTTTGGTTTATGAACTCATCACGAATGGCAGTGTGGAATCTCATGTGCATGgtacgtacttctgttcattggtgcccactactggacttcatttgtgtggagtcctcttcgatgattagatttatatgtgagtctgaatcatctcattatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181482|gb|BG352822.1|BG352822
EST:     TCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATG                         GAGTTGACAAGGAAAACAGCCCACTTGATTGGAGTGCTCGGTTAAAGATAG
genomic: TCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacttaact ... cttctggtagGAGTTGACAAGGAAAACAGCCCACTTGATTGGAGTGCTCGGTTAAAGATAG
EST: gi|192297900|gb|FG993194.1|FG993194
EST:     TCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATG                         GAGTTGACAAGGAAAACAGCCCACTTGATTGGAGTGCTCGGTTAAAGATAG
genomic: TCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacttaact ... cttctggtagGAGTTGACAAGGAAAACAGCCCACTTGATTGGAGTGCTCGGTTAAAGATAG