Sequence
atgc intronic sequence ATGC exonic sequenceATTTGTTCTTTGTGTTGAAAATGTTTCCCCTGGAACAAAATTTGATCCCGTCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtacttgaatcacatctaggtagatatcgatgatgaatgctgactgtttccatctgttttcttgtagccgattatttactccacagcctaatattcagtt...
Basic information
species | Glycine max |
transcript | GLYMA09G06640.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 5'ss of exon 7
ATTTGTTCTTTGTGTTGAAAATGTTTCCCCTGGAACAAAATTTGATCCCGTCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtacttgaatcacatctag--gtagatatcgatgatg-aatgctgactgtttccatctgttttcttgtagccgattatttactccacagcctaatattcagtt
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TTTTATTGTTGCTGTGGAGAATAGTTACCCAGGAACAAAATTTGATCCTGTACCTGTCAGCATGCCTGGTATTCTCATCACAGATGTCAGCAGAACAAAGgtactacctccgtcccaaaatgtagctatttctagcacagtact--ttgtcccaaaatgaagctatttttctacctaccttctcctctcaaccaatcacaac-
upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTTGTTCTTTGTGTTGAAAATGTTTCCCCTGGAACAAAATTTGATCCCGTCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtac--ttgaatcacatctaggtagatatcgatgatgaatgctgactgtttccatctgttttcttgtagc-cgattatttactccacagcctaatattcagtt
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TTTCGTTCTTGTTGTCGAAAACGTTTCTCCAGGAACAAAATTCGATCCCGTTCCTTCTTGCATTCCTGGGATTCTGATTACAGATGTCTCTAAGTCAATGgtaaaatatagttttgttgcgttcactat--acagttatttcctccctcgtcttttccttaacttggaatgccattttttcttctctag--------------
upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
ATTTGTTCTTTGTGTTGAAAATGTTTCCCCTGGAACAAAATTTGATCCCGTCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtacttgaatcacatctaggtagatatcgatgatgaatgctgactgtttccatctgttttcttgtagccgattatttactccacagcctaatattcagtt-
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GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctat-cagttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193327219|gb|FK292442.1|FK292442EST: TCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAG GAACTGATAGATTATTATAATATCTCCACACCAAGAGACTGGACTGGAAGG
genomic: TCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtacttgaat ... tattttgcagGAACTGATAGATTATTATAATATCTCCACACCAAGAGACTGGACTGGAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGTTCTTTGTGTTGAAAATGTTTCCCCTGGAACAAAATTTGATCCCGTCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtacttgaatcacatctaggtagatatcgatgatgaatgctgactgtttccatctgttttcttgtagccgattatttactccacagcctaatattcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG