Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGATTTTTTTAGGAAGCTCATGGAAGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACCTGATTTTCAAAATAATCAAAGGGATTGgtcagtatttttttttatgccattttattttttgtcactttgttgacatttttccatttccgatatatgtttgtttctcttgcag

Basic information

species Glycine max
transcript GLYMA09G04260.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04260.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 8
CAAGATTTTTTTAGGAAGCTCATGGAAGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACCTGATTTTCAAAATAATCAAAGGGATTGgtcagtattttttttta---------tgccattttattttttgtc-actttgttgacatttttccatttcc---------gatatatgtttgtttct-cttgcag
||||| |||||    ||||| |||||  | |||||  | || |||||||||||||| ||||||||||||||| |||| | ||| ||  ||||||||||  ||||||  | | ||||          ||| | | ||| ||   |  |   | ||   |||| ||| |||           ||    ||  ||||  | ||| |||
CAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCAgtcagtgctctctttttacttctctctgctactatatcttcaatttaggctcttatgatttatccgtttgttggcactaagaaccttgcgtgttattacttacag