1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACAAGTACTCAGCAAAGATCTCCCCTTGCGGATGGAAAGGGTTGGCTTGTGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagccaaatgtagcttgtttctagatttccagtgcctgtttgttatatctttgttttctatgatttacctgttcttgttatccttctgtttgttttcaccttttgcaccactgagtagtctcctacatgccacag
species | Glycine max |
transcript | GLYMA09G01830.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGTEST: gi|207783307|gb|GD759288.1|GD759288
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGT
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGAEST: gi|208178102|gb|GD978727.1|GD978727
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGA
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAAEST: gi|208306975|gb|GE102425.1|GE102425
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAA
EST: CCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGTEST: gi|207829753|gb|GD804959.1|GD804959
genomic: CCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGT
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGTEST: gi|208179812|gb|GD977987.1|GD977987
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGT
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGTEST: gi|208138347|gb|GD940649.1|GD940649
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGT
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGTEST: gi|208240552|gb|GE041426.1|GE041426
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGT
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGATTTACCCC-AAAAEST: gi|192296502|gb|FG989118.1|FG989118
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAA
EST: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAAT ATACACCTTAGGTACCAAATTGAGGATTTACCCCTAAAAGCAAAGGGGTGT
genomic: TGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagc ... catgccacagATACACCTTAGGTACCAAATTGAGGATTTACCCCCAAAAGCAAAGGGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAGTACTCAGCAAAGATCTCCCCTTGCGGATGGAAAGGGTTGGCTTGTGGAAGAGCTTATGAACCTTCATGGAGTTCCTCTTGGTGATTATTTCAATgtgagtgagccaaatgtagcttgtttctagatttccagtgcctgtttgttatatctttgttttctatgatttacctgttcttgttatccttctgtttgttttcaccttttgcaccactgagtagtctcctacatgccacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA