1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTCGAGATATTCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtttcaaataattacttaatatcttttaagtcctatggaaaaaagctgggcatttggacttgtgcagtatatccaacgtggatgattgcatgtaccatttgctctagatataaactatcactttacagttgttatttacttattttagagttaaccatcctttagggtgctaactaaaattatacag
species | Glycine max |
transcript | GLYMA09G01270.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGGCATGGGAATATATTCCTCTTGGTCCATTTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACEST: gi|193724130|gb|FK656410.1|FK656410
genomic: CAGGCATGGGAATATATTCCTCTTGGTCCATTT-CTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAAC
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|6567242|gb|AW234853.1|AW234853
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|213601975|gb|DB976222.1|DB976222
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGAGATATTCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtttcaaataattacttaatatcttttaagtcctatggaaaaaagctgggcatttggacttgtgcagtatatccaacgtggatgattgcatgtaccatttgctctagatataaactatcactttacagttgttatttacttattttagagttaaccatcctttagggtgctaactaaaattatacag
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA