Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGCAAAGAATGCAGATCCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatatcactttaattcattcttggcatacatcttggttgatgggattttctcacctatggtcaggttgatctggtcatctttcagaatgagttttcttatggttttcactgatcctgtag

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187278|gb|HO034427.1|HO034427
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
EST: gi|51335675|gb|CO979541.1|CO979541
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
EST: gi|298180046|gb|HO025261.1|HO025261
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
EST: gi|24136383|gb|BU926893.1|BU926893
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG