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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTCTACCAATGGTTCTAACCATTGCCGAGTCTCAGgtactaatatatctttcttttcctcacttccatataatacctaaattagtgctggtgttgtcagcattgtaattgaaaatcaatcttgcaccaagaaata...

Basic information

species Glycine max
transcript GLYMA09G00470.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 8
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTCTACCAATGGTTCTAACCATTGCCGAGTCTCAGgtactaatatatctttcttttcctcacttccatataatacctaaattagtgctggtgttgtcagcattgtaattgaaaatcaatcttgcaccaagaaata----------
|| ||||| || |||||||| || ||||||||| |||| || || ||| ||||||| || ||||||||||| || || ||||||||||| ||        |||  |   || |  | | || | | | | ||| ||  |   |  | |  |   | ||     | | || |  | |   |  ||||           
GTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAGgtgct--------ttttctaatcttaagtacttacatttcgtcaatcagatcgtattctattggaggttta--cagataccagtgattctatataaaatttgtttttctt

upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTCTACCAATGGTTCTAACCATTGCCGAGTCTCAGgtactaatatatctttcttttcctcacttccatataatacctaaattagtgctggtgttgt--cagcattgta----attgaaaatcaatcttgcaccaagaaata------
|| |||||||| ||||||||||| ||| | ||| ||||||| || ||||||||||| || |||||||| || || || |||||||||||| |||| |  ||| | | |  | |     |  |  |   | |  |       |  |  |  ||    |||      | || || || |  ||    || | |||      
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtag