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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTTATCTGTTCGCACATTGCCCTCACAGATCCATAGAAAGTCTCACTGGGGTTTTGTCCTTGAGGAAATGACATGGTTGGCGAATGATTTTGCACAGgtattattttttagacctacttttgattctctgctctatcatcatttggacttgaagactaacccttgttaaatttaattgatatttatttatttattttcaatacatcttttttgtcccaccaaaatgtgtttgtag

Basic information

species Glycine max
transcript GLYMA08G46710.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46710.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G018142_T01 (Zea mays), 5'ss of exon 4
AGAGTTATCTGTTCGCA-CATTGCCCTCACAGATCCATAGAAAGTCTCACTGGGGTTTTGTCCTTGAGGAAATGACATGGTTGGCGAATGATTTTGCACAGgtattattttttagacctacttttgattctctgctctatcatcatttggacttgaagactaaccct-tgttaaatttaattgatatttatttatttattttcaatacatcttttttgtcccaccaaaatgtgtttgtag
  |   ||||    | | ||||||  | | |||     ||||||  |||||||| ||||||||||||||| ||||| ||| |||| ||||||||    ||||||    |||  |      ||    |||   |  | | |  ||      ||     |  || |  | | ||||    ||   |    ||   |     || |||                                   
TCAACGATCTCCCTGTAACATTGCTTT-AGAGAAGAGGAGAAAGAGTCACTGGGATTTTGTCCTTGAGGAGATGACTTGGATGGCTAATGATTTCATGCAGgtacg--tttgcaagttatctccatatttcttcattttttttctcgaacacgcattgcgtatcattatattaagaagaaaaaaggggtaagaaccc--ttacaa-----------------------------------

upper sequence: GLYMA08G46710.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G24870.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAGTTATCTGTTCGCACATTGCCCTCACAGATCCATAGAAAGTCTCACTGGGGTTTTGTCCTTGAGGAAATGACATGGTTGGCGAATGATTTTGCACAGgtattatttt-ttagacctacttttgattctctgctctatcatcatttggacttgaagactaacccttgttaaatttaattgatatttatt-tatttattttcaatacatcttttttgtcccaccaaaatgtgtttgtag
 || ||||||  | | ||    ||     || ||| |   || ||||| |||| ||||||||| || |||||| ||||| |||| ||||||||||| ||||| |  | |  ||| |    ||||  |   |    |||||    || || | | ||| |        || |  ||||  | ||| ||| || | ||||||| |  |||  | |                           
CGAATTATCTTGTGGTACTGCACCAGTGGAGGTCCGTGAGAAATCTCAATGGGATTTTGTCCTCGAAGAAATGGCATGGCTGGCAAATGATTTTGCGCAGgtctggtctagttaaattatctttctaacataaattctata--tatctgca-tggaaaa--------tgctgcattttgtggatttttgttctgtttatttac--tacggcgt---------------------------

upper sequence: GLYMA08G46710.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 7
AGAGTTATCTGTTCGCACATTGCCCTCACAGATCCATAGAAAGTCTCACTGGGGTTTTGTCCTTGAGGAAATGACATGGTTGGCGAATGATTTTGCACAGgtattattttttagacctacttttgattctctgctctatcatcatttggacttgaagactaacccttgttaaatttaattgatatt--tatttatttattttcaatacatcttttttg----tcccaccaaaatgtgtttgtag-------------------------------
 || ||||||||| |  |||| || |   ||   || ||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||| | ||    || || |  |  |  | | ||     |    ||     |  || |  ||| |  || ||   | |  ||  | ||  | ||||| ||     || | |   |   ||    | ||| |   |||| |||  |                                
TGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGTTGGCAAATGATTTTGCGCAGgtctgat----tacacatgatcatcttcccctaacacaaacacacacacagatgtattctaccttttattctttgtttttcctcttcttttttatctaaaagaaaaatactgtaactggaatttccaacttcatgtctttcaaacttaccctttctttttctcattcacatatag