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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTGTCTGCATCAAGTTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATGAACCCAGgcatgttcattacctaagagggttggcattttattgcttcatccttcagtgtattgttctcacctttctcttttggttgtag

Basic information

species Glycine max
transcript GLYMA08G45990.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os09g10600.1 (Oryza sativa), 5'ss of exon 8
TTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTGTCTGCATCAAGTTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATGAACCCAGgcat------------gttcattacctaagagggttggcattttattgcttcatccttcagtgtattgttc----tcacctttctcttttggttgtag---
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TTGCTGGAGACATCAAGAAAAGGGTATCTTGCTGCAGTTTCAGCATCTAGTTACTCTTTCATCTCTTTACTCCAACACTTCCTTCCTATAATGAATCCAGgtatcaaacaatctttgctagtgctctgtaactattattattttctctttctgttcaggtgtggatttttaaaaatcatgctactttctcaatt-tatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345261|gb|BI970856.1|BI970856
EST:     TTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATGAACCCAG                         ATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATGAACCCAGgcatgttcat ... ttggttgtagATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTG