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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATAAGATGGGCTGCAAGCGATACATAACTGCAAGAGATATAGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGgtgataataatcctttctattgagcacatgttattttttcaaaatgtttcattttcgagttggtgatagataagccataaaatagaacttaattttaggc...

Basic information

species Glycine max
transcript GLYMA08G45800.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45800.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G48460.1 (Arabidopsis thaliana), 5'ss of exon 8
CTGATAAGATGGGCTGCAAGCGATACATAACTGCAAGAGATATAGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGgtgataataatcctttctattgagcacatgttattttttcaaaatgtttcattttcgagttggtgatagataagccataaaatagaacttaattttaggc-----
| || || ||||| || | | ||||| | || || | |||||| || || ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||  | |   |||| |  |||     ||  |  |||| |   ||||||  |||  | |    | |   ||  || ||    ||  || |   |     
CAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGAGGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGgtga-aatacacttcaatattaaaaaca----gttcatgtaaaagggaacattttt-agtgtgggtctaacagatca-gaactatgttttctttctttcccgcag

upper sequence: GLYMA08G45800.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s1365g00010.t01 (Vitis vinifera), 5'ss of exon 6
CTGATAAGATGGGCTGCAAGCGATACATAACTGCAAGAGATATAGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGgtgataataatcctttctattgagcacatgttattttttcaaaatgtttcattttcgagttggtgatagata---agccataaaatagaacttaattttaggc
| |||| |||||| |||||| ||||| |||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||  |||| ||||| ||||||  ||    | || ||  |||||  |    ||   |  |||| |||  | || || || | | | ||||   | |  ||  |     | |||| ||    
CAGATAGGATGGGTTGCAAGAGATACTTAACCGCAAAAGATATTGTGGAAGGTTCTCCAAATCTTAACCTTGCTTTTGTTGCACACGTTTTTCAACATAGgtgaggatggatccttttac-gagcagtta--gttccatttaaatatttactcttggattttgagttggatataaacctctatgaggtttcataatcttcaag