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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcag

Basic information

species Glycine max
transcript GLYMA08G45270.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 8
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccc--tgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagt----tgctactatgcag---------------------------------------------------
 || ||||| || || || |||||||| ||||| ||||||||||| ||||| || |||||| || | || |||||||||||||||||| | |||| |||||||||   || ||          | | || |  | ||   || ||   |||   | ||  |||    | | |||   |  || ||||  ||    |||   | | |||                                                   
TGCGATTGACTTAATCGTTCAGCATATTCGCACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacctgatgtaaccataaatgttctgcagtcttttcttatataagaacaattgtctgtcttt----tgatagtctcataatattgaatgtaatatgcactttttcaggatttttgtaacatatataaatattgacattgcaatgctgctttctttcag

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 8
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgca-atttatgggcct-tttcaattatctcacttagaactc-caaacttttgattttgtcattacagttaa-accatcttgatagttgcta---ctatgcag----------------------------------------
 || ||||| || || || |||||||| || || ||||||||||| ||||| || |||||| || | || |||||||||||||||||| | |||| ||||||||           ||     |  | || || | ||   || |||        |||||||  | |||| | | | ||    |     ||  || ||     | || ||                                        
TGCAATTGACTTAATAGTTCAGCATATTCGTACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatgtgaccataaatgtgctgcagttttttcttataaaaccgattgttttttgataatctcataatattgaatgttaatgcaattatttctggatttttgtagcgtatataaatattagcatttcaattcttctttctttcag

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 8
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcag-------
||| |||||| | ||||| || ||||| || || || ||||| |||||||| || || |||||| | || ||||||||||| |||||| | |||| |||||||||    ||| ||    | ||     |||| |  || | || |      ||    |||  |  | |  |   |||  |   |  | ||| | | ||  ||       
GGCAATTGATCTAATTGTTCAACATATTCGGACTAAACTTGGACAGCATGATCTTTGCAAAATACACCCCAATTTGTATGTAATTCAGACTACTTATCAGgtacct---aatgta-aaacattcatttttatttttctgaaaattt---gtttgctgtttgattgtaaacggagaactgtagaggca-ttgatgc-atagaggcatcat

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcag
 || |||||||||||||| || || ||||  || ||||| ||||| ||||| || |||||||| ||||| ||| | ||||| ||||| ||||||||||||||        | ||||   |||||||  |  |||     | |||    |  || |  ||| ||||    |   | ||        | |  ||| || |||||
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgtttt-----acttattccccttttc--tcgtctactcaacaacaatcattttcttgtttagtcacccaaa--agactgatcctttggccgctgct-tgcag

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaa-ctccaaacttttgattttg-tcattacagttaaaccatcttgatagttgctactatgcag
 || ||||| || ||||| || |||||  |||| ||||| ||||| ||||| || |||||||||||||||||| | || || || || || || |||||||||       || |||    ||  || |  ||   | | | |  |||  ||||    |    | ||   | | || |    |||||  ||              
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaatt---gatatatcaatctcatctac-atacgagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttg-cag--------------

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 8
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaacc---atcttgata--gttgctactatgcag-------------------------------------------------------------------------------------------
 ||||||||||||||||| || ||||| || ||||| ||||| || ||||| || |||||||||||||||||| | ||||||||||| |||||||||||||||         ||         |   ||||| |    | |   |     | | ||  | ||    |    |||||     |  || ||    |||  | | |   |                                                                                           
AGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGACAACATGATCTTTGTAAAATATATCCTAATCTTTATGTCATTCAATCAACTTTTCAGgtatatcagctcttcctatttgctattattatttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtcacatgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccag

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ31180 (Selaginella moellendorffii), 5'ss of exon 7
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcag
 ||||||||| ||||||| |||||||||| ||| || ||||| ||||||||||||   || || ||  ||||  | ||||| || || || ||||  ||||||          ||||  ||||| |  |      |||  |   |  ||||||||   |   |   |  | |  |  ||  |||||    |  || |     
TGCCATTGATCTGATTGTCCAGCATATCCACACTAAACTTGGGCAGCATGACCTGACGAAGATTTACTCTAACGTCTATGTGATCCAATCTACTTACCAGgtag---------tatgatcctttacgct------actgcggcgttgaaactttttcctagattcgtggaatgca--cactttgat--ccgtgaccag----

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ17251 (Selaginella moellendorffii), 5'ss of exon 6
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcag
 ||||||||| ||||||| |||||||||| ||| || ||||| ||||||||||||   || || ||  ||||  | ||||| || || || ||||  ||||||          ||||  ||||| |  |      |||  |   |  ||||||||   |                                           
TGCCATTGATCTGATTGTCCAGCATATCCACACTAAACTTGGGCAGCATGACCTGACGAAGATTTACTCTAACGTCTATGTGATCCAATCTACTTACCAGgtag---------tatgatcctttacgct------actgcggcgttgaaactttttcctag-----------------------------------------