Sequence
atgc intronic sequence ATGC exonic sequenceTGAATGATACACACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAgtcagttaattgtagaaaatgttgttagcaatgattattttccattttctttattccaccacccctcacaattgtagtgtattactcattacctcatcactaaaacatgatgctatatcttaaccag
Basic information
species | Glycine max |
transcript | GLYMA08G45210.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G45210.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g63270.1 (Oryza sativa), 5'ss of exon 7
TGAATGATACACACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAgtcagtta-attgtagaaaatgttgttagcaatgattattttccattttctttattccaccacccctcacaattgtagtgtattactcattacctcatcactaaaacatgatgctatatcttaaccag---------------------
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TGAATGACACTCACCCAACTCTTGCGATTCCTGAGCTGATGAGGCTACTCATGGATGTGGAGGGACTTGGTTGGGATGAAGCATGGGATATCACAAATAAgtgagctctaatatgacaagtgacaatataatttgatctcttttcttatcttt-ttccaccattgtttatttttccgcttt-tcattt-taacaagagtaattcaacttaaaagcttgacctaatcaataaattatttgaatggtccag
upper sequence: GLYMA08G45210.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 8
TGAATGATACACACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAgtcagttaattgtagaaaatgttgttagcaatgattattttccatttt-ctttattccaccacccctcacaattgtagtgtattactcattacctcatcactaaaacatgatgctatatcttaaccag
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TGAATGACACACACCCAACTCTTGCAATACCTGAGCTCATGCGATTGCTAATGGATGACAATGGACTTGGATGGGATGAGGCTTGGGATGTGACATCAAAgtaaaatatttatgcatgaacctttcaatatttcccaacaaagttttcacacttttctgttgggacttatttatatggtttacag-------------------------------------------
upper sequence: GLYMA08G45210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 7
TGAATGATACACACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAgtcagttaattgtagaaaatgttgttagcaatgattattttccattttctttattccaccacccctcacaattgtagtgtattactcattacctcatcactaaaacatgatgctatatcttaaccag
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TGAATGATACACATCCTACTCTTGCAATTCCAGAATTGATGCGATTACTGATGGATGACGAAGGACTTGCATGGGATGAAGCTTGGGATGTGACATCAAGgttcacta--tgtt-----ttttgtttgatagaacactcgctcatgggttttccagcatgaccttctttgtctgt----tgctttttcttatgttaatacaactttatggcaaaaatattgaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23731258|gb|BU763741.1|BU763741EST: ATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAA GACTATTGCGTACACTAATCATACTGTCCTCCCTGAAGCACTGGAGAAATG
genomic: ATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAgtcagttaat ... tcttaaccagGACTATTGCGTACACTAATCATACTGTCCTCCCTGAAGCACTGGAGAAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAATGATACACACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAgtcagttaattgtagaaaatgttgttagcaatgattattttccattttctttattccaccacccctcacaattgtagtgtattactcattacctcatcactaaaacatgatgctatatcttaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC