Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgtaagtattgaattgcttattgctatatagaattaccttttttttttggtaaatagacaatgctttttctagtttcagtttgtatgtgtgtgtggctgtc...

Basic information

species Glycine max
transcript GLYMA08G44920.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G44920.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 9
GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgtaagtattgaattgcttattgctatatagaattaccttttttttttggtaaatagacaatgctttttctagtttcagtttgtatgtgtgtgtggctgtc
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||| | |       || | |  |   |  | || | | || |||  |  |          ||    |  |  | ||| |    |     | || ||
GACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGgtaggtactcagcattgcataggtccaagtacattccatatcttattgacagttcttttccaggttaatcacatggaatttttgctagcactagactttc