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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGgtgaatgtgatactgttatggtagaaaacaattaatctgaatcatgaacattcaatatctattaaacaatacattgtgttcccccctttttagtttctaatgtttttctcaatgatttgtatttag

Basic information

species Glycine max
transcript GLYMA08G33560.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 8
GGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGgtgaatgtgatactgttatggtagaaaacaattaatctgaatcatgaacattcaatatctattaaacaatacattgtgttcccccctttttagtttctaatgtttttctcaatgatttgtatttag
| || || ||||||||||| || |||||||| || ||||||||||||||||||  | ||| |   ||||  || | |||  ||||| ||  |  || |     |  || ||||         ||  ||   |  ||||  |   ||   | || |      || ||| |||     
GAAAGAAATTCTGGAATTTATTCCACTTGCAGCCCATGCGTGACCAAAAGgtggctatgagatacttattctatataactcttaatttggttt-tggatgaagagaatgtatt--------tatgctgcagcttccttcatgactttccaagtctcctgttat-attcgtag----

upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ32904 (Selaginella moellendorffii), 5'ss of exon 9
GGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGgtgaatgtgatactgttatggtagaaaacaattaatctgaatcatgaacattcaatatctattaaacaatacattgtgttcccccctttttagtttctaatgtttttctcaatgatttgtatttag
||||    |||||||||||||||||||||||||| ||| | ||| | ||||||    || | ||| |        |||| ||  |   ||  |   ||  ||  ||||  ||  |                                                             
GGAAGCCTTTCTGGAATTTGTTTCACTTGCAACCCATGAGAGACAACAAGgtgcccttgtttctgctgc------aaaccatcta---gatacgctaatcttgtatatgcatgcag------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306491|gb|CD391694.1|CD391694
EST:     GGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG                         GGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTA
genomic: GGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGgtgaatgtga ... ttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTA