1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATTAAGGGCTATTAATCTTGTCTATATTAGACGGGATCTTGTTCAAAGTGGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAAgtaaacatgtttctaacccctgaatccattgtgcattcatggttaatgtttctagtagattcaaatttatgtattggcaagaggaagatgtagttaatttatttttccatcttttccagagacataccttctgaattttttgaaaaccttctcttcttttttgacatttgatataatgatgcag
species | Glycine max |
transcript | GLYMA08G27740.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA GACAACAAAATTTTGTTTGAAGTAAAGGCTGACGAACAEST: gi|51334977|gb|CO978843.1|CO978843
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAAgtaaacatgt ... aatgatgcagGACAACAAAATTTTGTTTGA-GTAA-GGCTGACGAACA
EST: GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA GACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCATEST: gi|27424390|gb|CA935910.1|CA935910
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAAgtaaacatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCAT
EST: AACAAGAATATGAAAA GACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCATEST: gi|193607435|gb|FK559162.1|FK559162
genomic: AACAAGAATATGAAAAgtaaacatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCAT
EST: GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA GACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAAgtaaacatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTAAGGGCTATTAATCTTGTCTATATTAGACGGGATCTTGTTCAAAGTGGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAAgtaaacatgtttctaacccctgaatccattgtgcattcatggttaatgtttctagtagattcaaatttatgtattggcaagaggaagatgtagttaatttatttttccatcttttccagagacataccttctgaattttttgaaaaccttctcttcttttttgacatttgatataatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC