1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttcatttgcatccatatttttggttttaacacctgatttaaaattgtattccatgttgaaacaatgtggtgagattgctgaactcctttgcttt...
species | Glycine max |
transcript | GLYMA08G24000.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|254325634|gb|GR838515.1|GR838515
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|151400412|gb|EV270226.1|EV270226
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|214007288|gb|DB986224.1|DB986224
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: CGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|16346794|gb|BI972389.1|BI972389
genomic: CGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|16279574|gb|BI943506.1|BI943506
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACT-AAG GGTGGTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|209705801|gb|BW661469.1|BW661469
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|9819982|gb|BE555495.1|BE555495
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGANGGTACACEST: gi|16282487|gb|BI945043.1|BI945043
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|254349062|gb|GR860334.1|GR860334
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|31306289|gb|CD391492.1|CD391492
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|15589667|gb|BI674283.1|BI674283
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|16282402|gb|BI944997.1|BI944997
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|15661720|gb|BI699091.1|BI699091
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAEST: gi|192298661|gb|FG990957.1|FG990957
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGA
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|37997552|gb|CF809141.1|CF809141
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|15589675|gb|BI674291.1|BI674291
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|214007434|gb|DB986969.1|DB986969
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|193458163|gb|FK421600.1|FK421600
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|120534367|gb|EH262500.1|EH262500
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|16996050|gb|BM085422.1|BM085422
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|120494201|gb|EH222368.1|EH222368
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|213604425|gb|DB978241.1|DB978241
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|18690675|gb|BM519523.1|BM519523
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACEST: gi|209706925|gb|BW661510.1|BW661510
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttcatttgcatccatatttttggttttaacacctgatttaaaattgtattccatgttgaaacaatgtggtgagattgctgaactcctttgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA