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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCATCACATTCGGTGCCATGGGTGATAGgtattaccacaatttagcaaccatcttttacatgatataatcatagcaaacttatgcattcattaatatgatctggatattgttaaattctaatgattttattagtatttgttaatttggtctgttggtgattaacacaatcttgttgcag

Basic information

species Glycine max
transcript GLYMA08G23730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 8
ATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCATCACATTCGGTGCCATGGGTGATAGgtattaccacaatttagcaaccatcttttacatgatataatcatagcaaacttatgcattcattaatatgatctggatattgttaaatt----------ctaatgatt--------ttattagtat----ttgttaatttggtc--tgttggtgattaac----acaatcttgttgcag
||||||||||||||| |||||| || |||||||| || |||||||||||||| ||  || ||   |||||  |||| || || || ||||||||||| |||||| ||||   ||||  |    | |   |  ||  |||    |    |  |   |   |||||| | | ||  | ||  |  ||  ||          || |||            ||| || ||    |||||| |||| ||    ||||||||||||    | ||  |  ||||||
ATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCATAACCTTTGGAGCCATGGGTGACAGgtatgacca---tttaatatttctgtacgatttgtgatatctttcttgagatctgggtctcatta-tgtcattggaattctactactttatctatctccctgatggaggagctgaactatgagcataattttgttagtttgatcgacattggtgattaacttgaaaaacttgattgcag

upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 5'ss of exon 3
ATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCATCACATTCGGTGCCATGGGTGATAGgtattacca---------------caatttagca-accatcttttacat---gatataatcatagcaaacttatgcattcattaatatgatctggatattgttaaattctaatgattttattagtatttgttaatttggtc--tgttggtgattaac----acaatcttgttgcag
||||||||||||||| |||||| || |||||||| || |||||||||||||| ||  || ||   || ||  |||| || || || ||||||||||| |||||| ||||               | ||||   | | | |  || | ||   | | | || ||  || |   || |    | |      ||||   |  ||    |    ||  || |   || | ||||||| |||| |     ||||||||||||    | ||  |  ||||||
ATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCATAACCTTTGGAGCCATGGGTGACAGgtatgaccatttaatatttctgtacgatttgtgatatctttcttgagatctgggtctcattatgtcataggaattctactactttatctatctccctgatggaggagctgaactatgtgcataat-tttgttagtttgattgacattggtgattaacttgaaaaacttgattgcag