1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTTGATCTTGTAAAGATTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAGgtatatgtatatatcattatccaaaaaatgcaaatttattttttctgacctagtctttcagaatgaatgttttaatttaattaatggaccctaaaaaacaaaaggaatatgccatactgatcaaaaagctttgtcgtggacttgaacatag
species | Glycine max |
transcript | GLYMA08G23440.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAG GGGCTCTTGGCTAAGGCAAAGTTTCATGTAAGCTACAATGGTAAAGCAATCEST: gi|213595816|gb|DB981496.1|DB981496
genomic: TTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAGgtatatgtat ... ttgaacatagGGGCTCTTGGCTAAGGCAAAGTTTCATGTAAGCTACAATGGTAAAGCAATC
EST: TTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAG GGGCTCTTGGCTAAGGCAAAGTTTCATGTAAGCTACAATGGTAAAGCAATCEST: gi|7691333|gb|AW759392.1|AW759392
genomic: TTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAGgtatatgtat ... ttgaacatagGGGCTCTTGGCTAAGGCAAAGTTTCATGTAAGCTACAATGGTAAAGCAATC
EST: TTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAG GGGCTCTTGGCTAAGGCAAAGTTTCATGTAAGCTACAATGGTAAAGCAATC
genomic: TTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAGgtatatgtat ... ttgaacatagGGGCTCTTGGCTAAGGCAAAGTTTCATGTAAGCTACAATGGTAAAGCAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTTGATCTTGTAAAGATTATTACTGACATTAACATTGCTGTTGAATCCGGAGAATTTGACACTGAGgtatatgtatatatcattatccaaaaaatgcaaatttattttttctgacctagtctttcagaatgaatgttttaatttaattaatggaccctaaaaaacaaaaggaatatgccatactgatcaaaaagctttgtcgtggacttgaacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA