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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgcctcatgtcttttgcagccatttctttttctgtcccttaatatgtaatgtgatctaatgctatgtttctttatgcatttgcttcag

Basic information

species Glycine max
transcript GLYMA08G23320.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 8
CGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgcctcatgtcttttgcagccatttctttttctgtcccttaatatgtaatgtgatctaatgctatgtttctttatgcatttgcttcag
|     |   ||||||||||| ||| |||||||||||  ||||| | ||| |||| ||||| |||||||| || ||||| ||||| || ||||| |||||||| |  | || ||||     |     | ||     |    | ||||  |   |    | |   | | |||| |  ||      ||  | |||
CAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCgtgag--cttcctgtccacccc--ttttgtcccaaacatatctttaactttcgacaaaaacattttccatgtattatt-----cttattacag

upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
CGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgcctcatgtcttttgcagccatttctttttctgtcccttaatatgtaatgtgatctaatgctatgtt--tctttatgcatttgcttcag
|     |   ||||||  ||   || || ||||||||| ||||  | ||  ||||||| ||||||||||||||||| |||||||| || |||||||||||||  ||  || |||||  |   |     || ||||||  | | ||  |    ||  |  |||  | || ||||     | ||||| ||||| |||
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctctt-ctttgttgactctcatgcacttgctgcag