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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTAATGAGAAGCAGCAGCAGCAGAGCTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgtttaaattcttgctttggatatgtagtttttgggttatttagacatcatttggcttaagtatatatttagtgtctatatgtctgatgcatttg...

Basic information

species Glycine max
transcript GLYMA08G22100.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18038919|gb|BM307213.1|BM307213
EST:     CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG                         GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: gi|58023875|gb|CX710616.1|CX710616
EST:     CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG                         GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: gi|21888224|gb|BQ741428.1|BQ741428
EST:     CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG                         GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: gi|7234188|gb|AW569527.1|AW569527
EST:     CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG                         GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: gi|23730679|gb|BU763435.1|BU763435
EST:     CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG                         GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: gi|151409143|gb|EV278951.1|EV278951
EST:     CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG                         GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: gi|51335761|gb|CO979627.1|CO979627
EST:     CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG                         GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTAATGAGAAGCAGCAGCAGCAGAGCTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgtttaaattcttgctttggatatgtagtttttgggttatttagacatcatttggcttaagtatatatttagtgtctatatgtctgatgcatttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG