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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGATGCTATCATTATCTTCAGCATTATATGCCTCCAGTTACCATTTGAGTTGGCATATGCTCATCTTTATGAAGTTCTTGATTCTGATATAATTAAgtaagactacgtatcatttttttctgtgcttctacttgttagtgttaattgaatattctgttatttttatttttggaatttctttctctggattattctc...

Basic information

species Glycine max
transcript GLYMA08G20980.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20980.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G091494_T02 (Zea mays), 5'ss of exon 8
GAAATGATGCTATCATTATCTTCAGCATTATATGCCTCCAGTTACCATTTGAGTTGGCATATGCTCATCTTTATGAAGTTCTTGATTCTGATATAATTAAgtaag-actacgtatcattt---ttttctgtg-----cttctacttgt-----tagtgttaattgaatattctgttatttttatttttggaatttctttctctggattattctc--------------------------------------------------------
| ||  ||||||||||| |  |    || || || || ||||| |||||||||||||| ||||||||||| |||||  ||   ||  ||||    || |||| || | | | |||  ||    |||  | ||     |||  |  |||     |    ||  | |     | |  ||   |  |  ||   |    |||| || | ||    |                                                         
GGAACAATGCTATCATTGTGCTGGCTATCATCTGTCTTCAGTTGCCATTTGAGTTGGCCTATGCTCATCTATATGAGATTACAGAAACTGAGGCTATGAAgtgagtatttcatatttttcaaatttgatatggtcaccttaaagctgtgcaactgaccttgctagccagcttttctaccctagtacttaataccagtttcccttgttttccatttctggtcatcattaaaatctgcactctattattctgatcaattttatatcatacag

upper sequence: GLYMA08G20980.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G089553_T01 (Zea mays), 5'ss of exon 8
GAAATGATGCTATCATTATCTTCAGCATTATATGCCTCCAGTTACCATTTGAGTTGGCATATGCTCATCTTTATGAAGTTCTTGATTCTGATATAATTAAgtaag--actacgtatcatttttttctgtgcttctacttgttagt--gttaattga--atattctgttatttttatttttggaatttctttctctg-gattattctc-------------------------------------------
| ||  ||||||||||| |  |    || || || || ||| | |||||||||||||| ||||||||||| |||||| ||   ||  ||||  | || | || ||    || | ||  ||     || ||  |  ||||| |||   | |  |  |  ||| |   | || |   |||      ||| |   | |  |  | |  |                                            
GGAACAATGCTATCATTGTGCTGGCTATCATTTGTCTTCAGCTGCCATTTGAGTTGGCCTATGCTCATCTATATGAAATTGCAGAAACTGAGGTTATGAGgtgagtagatatggatacttaaaaactatgaattgacttgctagctagcttctctaccatagtacttaatatcagtttcccttgtttttccatttatggctgtcattaaaatctgcactgtattattctgatcaattttatattatacag