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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttacattttgcttatgttatttgttttccttatggcttacacctaacaagtaacaaagttgaggttattggggaaaaattaaagggaagtagat...

Basic information

species Glycine max
transcript GLYMA08G20830.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttacatt--ttgcttatgttattt----gttttccttatggcttacacctaacaagtaacaaa--gttgaggttattggggaaaaattaaagggaagtagat-----------------------
||||||| || |||||||||||||| ||||| || |||||||| || ||||| ||||||||| || ||||||||||  | |||||  ||||| || || ||| || || ||||  || || ||  | |||     | |||   || | |||      |  || | |     | |  |  | |   |     | ||      | || |                        
ACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTgtgagttttcatttgttactcatactctttttcaatattcaacatagtttat-ttggatgagcatctggtggattggcctgtcttgttcgtactattttttattatagctattcctattctatgtgtgtag

upper sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagct-tacattttgcttatgttatttgt--tttccttatggcttacacctaaca-agtaacaaagttgaggttattggggaaaaattaaagggaagtagat------------------------------------------------------------------
|||| || |||||||||||| |||| |||||||||||||||||||| || || ||  ||||  |||| || ||||| || |||||    ||| ||||  ||| ||   | ||| ||     | |||  ||     |  |    |  |  ||   |   |||     | ||    | |  |  |  |  |      | |  ||||                                                                  
ACCCAACTCATTGTAATACACTGGCCTATAGCAGTTCAAAGGGTTCTATCCGACTCATTGATCTGCGACAATCAGCTTTGTGTGACAACCATTCCAAGATgttagtaattcatcttatgccttttacctgcaacattttatccgtgtgtactggaggtagtcgtggacttcttttgacggttgggacttggggctgcataagattctctattctatactagtaatagaatgtcacaatatcagcatgagataacaagaacctttaaacag

upper sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 9
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttacattttgcttatgttatttgttttccttatggcttacacctaacaagtaacaaagttgaggttattggggaaaaattaaagggaagtagat-----------
| ||  | |||||||||||| |||| ||||| |||||||||||||| || || ||| ||||  |||| || |||||| | |||||    ||| | ||| ||| || | ||                |   | ||| ||    ||   |||      |  ||||||||||    |    |||  |||      | ||  |            
ATCCATCCCATTGTAATACACTGGCCTATAGTAGTTCAAAGGGTTCTATCCGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttag-taacccccca----------taactctccctaacattttatccttttgtctggcaaagttgagaacttgtatgaaggattgggaatatgtgcagttatttatgga

upper sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttacattttgcttatgttatttgttttccttatggcttacacctaacaagtaacaaagttga-ggttattggggaaaaattaaagggaagtagat---------------------
| ||||| ||||| ||||||||||| ||||| || || ||||| || ||||| ||||||||  ||||||| |||||  | || ||   |||| || || ||| |||||  ||||  |   |   || |  | | |||   |   | | | |   | ||      ||     ||||     ||   |    |     |   |                     
ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagcttttatttcacac-taacatatactctacttggaga--atatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactatttctatacctgttgtcttcttgtag

upper sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G51690.2 (Arabidopsis thaliana), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttacattttgcttatgttatttgttttccttatggcttacacctaacaagtaacaaag-ttgaggttattggggaaaaattaaagggaagtagat
| ||||| ||||| ||||  || || ||||||||||| || ||||||||||| ||  ||||  |||| |||||||| ||||||||||| ||| | ||| ||||||  |  |   ||   ||  | ||   |||  |||  |   |    || |  | ||  | | |  |     |||   ||  ||   |   |  |   |
ATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTCGAAAGGTTCAATTCGCCTGATTGATCTGCGCCAGTCAGCTTTATGTGATTCACATTCAAAATTgtaagtcttgagactggcaattatgttaagtttttttagagtcca-gtatatcttgaaaggaggatctaaaaacttgtataatcatctcaattacttcttt

upper sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttacattttgcttatgttatttgttttccttatggcttacacctaacaagtaacaaagttgaggttattggggaaaaattaaagggaagtagat------
||||||| |||||||| |  || |||||||| |||||||| || ||||| || |||  ||| ||||| ||||||||| | |||||||||||| | ||| ||| ||        |||||| | ||| |  ||||  || |   || ||  |  |    || ||  |    | |   || || |||| ||| || | ||||       
ACCCTACCCATTGTAACATGTTAGCATATAGTAGTTCAAAAGGCTCAATCCGCCTTAATGATTTGCGACAGTCAGCACTGTGTGATTCTCATTCTAAATTgtgagt----ggcttgcttgttttagtcatttttatttt--ttttcatttgtcttaaaataatataataggtgaaggagagaaatcaaatggcaatagaataactc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193650550|gb|FK599845.1|FK599845
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|207794480|gb|GD764791.1|GD764791
EST:     GTCTTAGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: GTCTT-GTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|208290901|gb|GE086773.1|GE086773
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|14990248|gb|BI315921.1|BI315921
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|208198530|gb|GD995551.1|GD995551
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|208255790|gb|GE052769.1|GE052769
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|193488304|gb|FK456127.1|FK456127
EST:     CTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|208216614|gb|GE012546.1|GE012546
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|207767896|gb|GD740308.1|GD740308
EST:     CTTGTTTGACTTTGTCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CTTG-TTGAC-TTG-CGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|208333147|gb|GE128194.1|GE128194
EST:     CATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|207823418|gb|GD795745.1|GD795745
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|208073582|gb|GD869431.1|GD869431
EST:     GTCTTGTTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: GTCTTG-TTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|193687174|gb|FK630415.1|FK630415
EST:     CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttac ... ttttgtacagATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTAT
EST: gi|207842807|gb|GD817319.1|GD817319
EST:     TCATGCCAAACTT                         ATTTTGTAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGAT
genomic: TCATGCCAAAC-Tgtaagcttac ... ttttgtacagA-TTTG-AGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGAT