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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATTGAAATACCAGCAGAGCCTCCAGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCGAGCCCTAGAGgtaagaagactaatcaatagcctatgtttatggattttattctggtaaagttgtatcgttgtccttttaatttcttttgcacctatatacttgcaacttttattcattttatttctgacaattggacagacaaattcaagtctttttggtgttttttcgacattgatttcag

Basic information

species Glycine max
transcript GLYMA08G20360.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 19
ATTCATTGAAATACCAGCAGAGCCTCCAGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCGAGCCCTAGAGgtaagaagactaatcaatagcctatgtttatggattttattctggtaaagttgtatcgttgtccttttaatttcttttgcacctatatacttgcaacttttattcattttatttctgacaattggacagacaaattcaagtctttttggtgttttttcgacattgatttcag
 |||||    |||||| | ||||| || || ||||||||||  || || || ||||||||||||||||||||||||||||| ||  | | |   ||  ||||||||    |  ||  ||| | |||||| |  ||          | ||  |||  | | |  | || | ||| | ||  |    || |   | |   |   ||   | | |||| |                                                       
GTTCATGCGCATACCACCTGAGCCCCCTGCGATTGTGGAGGGAAAAAGGCCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTGCAAAATCTGAAGgtaagatagttcttc--tagtccatgttt-taaat---gaataaatgaatatgttccttag--cattgagtttgtgttttagacttaaatccg-atgatccgtttgatgtgtttcag-------------------------------------------------------

upper sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 7
ATTCATTGAAATACCAGCAGAGCCTCCAGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCGAGCCCTAGAGgtaagaagactaatcaatagcctatgtttatggattttattctggtaaagttgtatcgttgtccttttaatttcttttgcacctatatacttgcaacttttattcattttatttctgacaattggacagacaaattcaagtctttttggtgttttttcgacattgatttcag
 |||||  | |||||| ||||||| || || ||||||||||| || || || ||| ||||||||||||||||||||||||| ||  | | |   ||  | || || | | |  ||  |||    | || |  || | | |||      | |||  |     | ||  ||| |    |    | |   |    |    ||| |                                                                      
GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgaggaaattcttc--tagttctt-ttaaatgactgtgttccttagtacttgattgaaaatact--taaatctgatgatgctttcttttcggtgggtttcag---------------------------------------------------------------------

upper sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 8
ATTCATTGAAATACCAGCAGAGCCTCCAGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCGAGCCCTAGAGgtaagaagactaatcaatagcctatgtttatggattttat-tctggtaaagttgtatcgttgtccttttaatttcttttgcacctatatacttgcaacttt-tattcattttatttctgacaattggacagacaaattcaagtctttttggtgttttttcgacattgatttcag
 |||||  | |||||| | |||||||| || |||||||| |  ||  |||| ||||||||||||||||||||||||||||| ||  | | |   ||  ||||||| |  ||| | |  |   |    |  |  ||  | | |||  ||      | | |      |  |  |         || || |  |   | | | | | |||   ||  ||                                                          
GTTCATGCACATACCATCTGAGCCTCCTGCAATTGTGGATGGAAAGCGACCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTACAAAATCTCAAGgtaaggaagctattaatcaagttcatctcttaaatgatgtgtctcatagcaacctcttgaaagaatgctc-tggtgacaatacttaaaagccgacgattctgtcttctggttggtttcag------------------------------------------------------