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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattccatttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatttttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcag

Basic information

species Glycine max
transcript GLYMA08G19260.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os08g07960.1 (Oryza sativa), 5'ss of exon 9
GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattccatttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatttttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcag
|| || ||||| ||||||||| |||| || ||||| || || ||||| |||||||||||||| |||||  | || ||||||      |   | ||    | |||||||    | ||    |   ||  ||||| |  | ||      |  ||    || || |  |  |  |   |  |||       
GTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGgtttgatgttggctcttttgaagttccatttg--tactggttattgcac-ttgtatttttgttcccttgagtattcagtgatttttaatagtcataattgctt-------

upper sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G058498_T01 (Zea mays), 5'ss of exon 9
GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattccatttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatttttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcag
|| || ||||||||||||||| |||| ||||| ||||||||||| || |||||||||||||| || ||| |||| |||||    | ||||  ||      |||    |  |||   |              |  |||| | | | ||||          | || |  ||     || |  || ||   
GTCCATCACACATTTGCAACTGCTGGATCTGACGGTGCTTTCAACTTCTGGGATAAGGATAGCAAGCAGAGGCTAAAGgtagaccaatttccatgg----ctttttgttgattttcacttgtgttggtagctgttgatttctgttgcatcgattatccttgattttgtgt---tgtttactggtt---

upper sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 9
GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattccatttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatttttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcag
|||||   ||| ||||||||| |||| || ||||||||||||||||| ||||| || |||||||||||  | ||||||||  || | |  |   |  |   ||   ||   |  | ||  ||   || |   |||  | | ||  |  |   ||||                                
GTACATGGCACTTTTGCAACTGCTGGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAACAAAGACTCAAGgtattttcctcctgcattgattttttattttgttaaccaagtaat-tatctaacagttttgtattctgtgtccccacag-------------------------------

upper sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g09150.t01 (Vitis vinifera), 5'ss of exon 8
GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattccatttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatttttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcag
|| || || |||||||||||| | || |||||||||||||| ||||||||||| ||||||||||||||| | || |||||   |||         ||| |||| || |   |   ||     | | |  |||  |     | ||    |  |||| | | ||  | |  | | |||  || |||||| 
GTGCATCATACATTTGCAACTGCAGGGTCTGATGGTGCTTTTAATTTTTGGGACAAGGATAGTAAACAGAGACTTAAGgtgcctcc--------caaatactttcagtttttgaatatttttcccgttctgttatttctgtgttttagttgtcac-ttcatacatga-actatcgttcctggtttcat

upper sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattcca-----tttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatt-tttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcag
|| || ||||||||||| ||| | || ||||| |||||||| ||||| ||||| ||||||||||||||| | |||||||| ||  ||     |  || || || |  | | |    ||  |  |  |||| | ||    |  |||| ||    ||  |    |  ||| |  |  |  |               
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaaggattcctttttgaatatgttcttctcgttgttttcggacac-tgttactcttctattattctagattctattgtttttaccctaatcgga---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760085|gb|AI965448.1|AI965448
EST:     CTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAG                         GCCATGTTGAGATGCAGCCTACCTATTCCTTGCAGTACCTTCAACAATGAT
genomic: CTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattccat ... cttgtttcagGCCATGTTGAGATGCAGCCTACCTATTCCTTGCAGTACCTTCAACAATGAT