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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttgactatactagttgccattaattggctgcactacactttcatagtttatgagaataactgcatcatgaacaacttattcaacctatgttga...

Basic information

species Glycine max
transcript GLYMA08G18810.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 8
GTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaag-tcttgactatact-agtt-----gccattaattggctgcacta-----cactttcatagtttatgagaataactgcatcatgaacaacttattcaacctatgttga------------
||||  ||| | |||||| | || |||||||||||||| ||||| || |||||||| |||||||| |||||||  || ||   | ||| || |     | | |   |||   |   ||      |       | |||   ||  | | |   |  | ||||||| | |   | | |||| |            
GTTACTCGCTTAAGGCTTCTTGGTGACCAAGTGCATTCTACTCGCATAGCTTTTGTTGAATTTGCCATGgtaaactcctgttaaaactcagcttctgtgtcctcttttgttagtgttaacaagtaaagctgaacttttcaaggcttagtttttacttaacaactgaatatgcgtttgtttacgggataaaaag

upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 8
GTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtct---tgactatactagttgccattaattggctgcactacactttcatagtttatgagaataactgcatcatgaacaacttattcaacctatgttga
|||   ||||| |||||||||||||| || |||||||| || || || |||||||| |||||||||||||| ||| |   ||||  |  |             | ||     |||| ||| ||      ||   |  | | | | || |    ||  ||  | ||||  |  
GTTTCTCGCCTGAGGCTTTTAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgtatgacagtgttgacatattcaggcttgcccagttacatttttattaggcttgttgagga-tacttgat-agtttctgtttttatctataatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934604|gb|BQ079634.1|BQ079634
EST:     TAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCCATTATTGCACTAAACTGTAGT
genomic: TAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttg ... ttttgagcagGCTGAAAGTGCCATTATTGCACTAAACTGTAGT