Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCCGGAGTTGTCAAGGATTGGGTGGTTGTCTTACTGTCTGCTGTTCTGTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTGgtaagtaattgattctgtttgaccttctaaattttcctgtctcactagatatatagcctttgaggatttttcataacatttcctgcaaatgccagagtat...
Basic information
species | Glycine max |
transcript | GLYMA08G18730.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G18730.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G14410.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGCCGGAGTTGTCAAGGATTGGGTGGTTGTCTTACTGTCTGCTGTTCTGTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTGgtaagtaattgattctgtttgaccttctaaattttcctgtctcactagatatatagcctttgaggatttttcataacatttcctgcaaatgccagagtat
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GTTGCTGGCGTTGTCAAGGATTGGGTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGTTACGCCATCGgtaagacaaaacttctca-----catacaaat-----tggctaacaagaaaaaaa---tttg----cttctcatacagtgtgctctgtgttcacacacag
upper sequence: GLYMA08G18730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g00460.t01 (Vitis vinifera), 5'ss of exon 6
GTTGCCGGAGTTGTCAAGGATTGGGTGGTTGTCTTACTGTCTGCTGTTCTGTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTGgtaagtaattgattc--tgtttgac-cttctaaattttcctgtctcactagat----atatagcctttgaggatttttcataacatttcctgcaaatgccagagtat
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GTTGCTGGAGTTGTAAAGGATTGGGTTGTTGTCTTACTGTCAGCAGTTCTGTTTGCAGACACAAAACTGACAATTATAAATCTGTTTGGTTATGGAGTTGgtaagtatttgaacaaatgttttttgcattttgatactttgatctcattggaatctggcatatcctcttagaaatggctaatgagtatgtcatatgtgac-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208268612|gb|GE067283.1|GE067283EST: GTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTG CTATTGCTGGGGTAGCAGCATATAATAATTGCAAGTTGAAAAAAGAAACCT
genomic: GTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTGgtaagtaatt ... ttttatacagCCATTGCTGGGGTAGCAGCATATAATAATTGCAAGTTGAAAAAAGAAACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCCGGAGTTGTCAAGGATTGGGTGGTTGTCTTACTGTCTGCTGTTCTGTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTGgtaagtaattgattctgtttgaccttctaaattttcctgtctcactagatatatagcctttgaggatttttcataacatttcctgcaaatgccagagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT