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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCAGTCAAAGCCTTTTCTTTTGAAAATTCTGAAGTTTTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatagtgttgcattgcattagtgtaacaaatatactgtaacttcagttttcattgttaacggggcggtaactggtatctccacag

Basic information

species Glycine max
transcript GLYMA08G18500.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337551|gb|BI498207.1|BI498207
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG                         TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: gi|8670006|gb|BE191113.1|BE191113
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG                         TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: gi|19053511|gb|BM732178.1|BM732178
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG                         TGAAAGATGGGTTCTCCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: gi|7478474|gb|AW666280.1|AW666280
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG                         TGAAAGATGGGTTCTTCATTCTACAGCAG
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAG
EST: gi|120533717|gb|EH261850.1|EH261850
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAAACGTTCTACTACAAG                         TGAAAGATGGGTT
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTT
EST: gi|10231134|gb|BE800081.1|BE800081
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG                         TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: gi|7028660|gb|AW458443.1|AW458443
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG                         TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: gi|8670000|gb|BE191107.1|BE191107
EST:     TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG                         TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: gi|16345122|gb|BI970717.1|BI970717
EST:     CAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTNNNACTACAAG                         TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: CAGGCTTATTGTGATAGCAGCAAGCCAAACCGTT-CTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCAGTCAAAGCCTTTTCTTTTGAAAATTCTGAAGTTTTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatagtgttgcattgcattagtgtaacaaatatactgtaacttcagttttcattgttaacggggcggtaactggtatctccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG