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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttatattcttttctgatgtagctcttgacatggttgctttaaaccttggtaaatgagcatcacttgcaatcctaatttctgattacattacatt...

Basic information

species Glycine max
transcript GLYMA08G17810.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207714553|gb|GD696998.1|GD696998
EST:     TTTGATGATAATGGGCCACAATTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|15815476|gb|BI787751.1|BI787751
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTCTGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|27425474|gb|CA936994.1|CA936994
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|6567102|gb|AW234729.1|AW234729
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAN                         GTGGATCCATCANGTTCATATTTNTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|27424967|gb|CA936487.1|CA936487
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCANGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|15285795|gb|BI469686.1|BI469686
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCAGGGTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|13311848|gb|BG405499.1|BG405499
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|207710725|gb|GD691717.1|GD691717
EST:     TGTCCCTGCTAGTTGTTGGGTTTGATGATAACGGGCCACAGTTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGAAAG
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAG
EST: gi|7690855|gb|AW758992.1|AW758992
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGGAAGCTTCTGCTATGGCGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|13563115|gb|BG551335.1|BG551335
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCA
EST: gi|298192268|gb|HO036350.1|HO036350
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATC
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATC
EST: gi|8283306|gb|BE020867.1|BE020867
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATGACGGGCCACAATTATATCAG                         GTGGATCCATCAGGTGCATATTTGTCTTGGAAAGCTTCTGCTTTGGGGAGA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|27446035|gb|CA953158.1|CA953158
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
EST: gi|24135847|gb|BU926357.1|BU926357
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCCTCCAG-TTCATATTTTTCTTGGAAAGGTTCTGCTATGGGGAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATC-AGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAA
EST: gi|17023069|gb|BM094103.1|BM094103
EST:     TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG                         GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA
genomic: TGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAGgtgtgtttat ... ttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAA