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AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatccttgtcttatttcctctgctcctctctaatgtagcttaagtgctcaactattttgcatggctgtaagtgataaactaaggccatgacctaa...
species | Glycine max |
transcript | GLYMA08G17580.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|23726204|gb|BU761086.1|BU761086
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|6341684|gb|AW164508.1|AW164508
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|254330010|gb|GR839563.1|GR839563
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAA-GAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|209723711|gb|BW682790.1|BW682790
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGEST: gi|120532010|gb|EH260143.1|EH260143
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTG
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|213616987|gb|DB959299.1|DB959299
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGEST: gi|26047849|gb|CA784504.1|CA784504
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGG
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|151394270|gb|EV264141.1|EV264141
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|22524407|gb|BU083218.1|BU083218
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATAC-GCTATTGGTATGTGGCAATTATTAEST: gi|192329316|gb|FK020235.1|FK020235
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGGAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTAEST: gi|22524065|gb|BU082876.1|BU082876
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
EST: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAG GGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
genomic: AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatcc ... ccttttgcagGGTCAAAAATCTCTTGCATTGGATACTGCTATTGGTATGTGGCAATTATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAATTCCGTGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAGAAGgtatgcatccttgtcttatttcctctgctcctctctaatgtagcttaagtgctcaactattttgcatggctgtaagtgataaactaaggccatgacctaa
- - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctctc