Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGGgtgagatattggatacttcagaactagcttttacttgtataaccctgtttggtgaatatgaatgaccaaaattgtttttatgttggactgaacag

Basic information

species Glycine max
transcript GLYMA08G16670.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16670.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g10100.2 (Oryza sativa), 5'ss of exon 8
GAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGGgtgagatattggatacttcagaactagcttttacttgtataaccctgtttggtgaatatgaatgaccaaaattgtttttatgttggactgaacag
|||||| |||||||| |||||| | || ||||| |||||| | || ||||| |||||||| ||||||||  ||| |||||| |||| ||||||||||||||| ||  | ||     ||  ||| |    |||  | |||||   |         | |   |     | ||  |  |||| |    || | | |||
GAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTTGGCTGCACCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGGgtaagcaagtg-----ttatgaatt----tttcatggtatagtgcccaacttccattggaaccatgctaagct--ttttgtaactgattca-cag

upper sequence: GLYMA08G16670.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g35700.1 (Oryza sativa), 5'ss of exon 8
GAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGGgtgagatattggatacttcagaactagcttttacttgtataaccctgtttggtgaatatgaa--tgaccaaaattgtttttatgttggactgaacag
|||    |  || ||   ||| |||||||| || ||||| ||||| || || |||||||||||||||||  |||||||||| ||| || | || || |||||  | | |     ||||   | |||   ||| |     ||||        ||||||   ||  ||| | ||  || | ||                
GAACGGTAGAGGTTACCATCTACCAGTTGACATTTGGAGTTTGGGATGTACTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGGgtatgctttc----actttgtagctatagttttccaa-gtaactt------gtgaatgccaagctgatccaatctgatcttgcag------------

upper sequence: GLYMA08G16670.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g35010.1 (Oryza sativa), 5'ss of exon 8
GAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGGgtgagata-----ttggatactt--cagaa--ctagcttttacttgtata---------accctgtttggtgaatatgaatga-------ccaaaattgtttttatgttggactgaacag------------------------
|||||  || || |||| |||| | ||||||||||||||| | || || ||||||||||| ||||||||  | || | ||||||| ||| ||||||||  ||  | ||     ||  ||| ||  || ||  ||   ||  ||||| | |          ||   ||| ||||| || | ||           | | |  ||||||  | |  ||| |                          
GAATAACAAAGGATATAATCTTGCGGTTGATATATGGAGCCTTGGATGTACAATTATTGAGATGGCAACCGCGAAGCATCCCTGGTATCCGTATGAAGATgtatgctacttcgtttaatatttaccaaaatgctttgttccacttggagatgctattctgcctcttttagtgaaaataactggaggactcttgatacttcttttatagttgg-tgagcctcatgtcagattcttggtcttgcag

upper sequence: GLYMA08G16670.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G540772_T01 (Zea mays), 5'ss of exon 9
GAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGGgtgag----------atattggatacttcagaactagctttt----acttgtataaccctgtttggtgaatatg-----aatgaccaaaattgtttttatgttggactgaacag--------------------------
||||| |||||| || ||| ||  ||||||||| |||||| | |||||||||||||||||||||| |||    | || ||| ||| |||||||||||   ||  |           | ||  ||  | | ||| || ||       ||||| || |  |  |||| |   |||      | | || |  ||    || ||| |    | ||                             
GAATAAAAATGGGTACAGTTTTGAAGTTGATATCTGGAGCCTTGGGTGCACAATTATTGAAATGGGAACTGGGAGACATCCTTGGCATCAGTATGAACATgtatgtcttcacattgtgttaaattttactgaaatatctccatccaacttggatcagtcactttgcttcttatagccaaagtaactagcatgcacttcatggtttttttaatgctaatgtccattttgcctggctttcag

upper sequence: GLYMA08G16670.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 8
GAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGGgtgagatattggatacttcagaactagcttttacttgtataaccctgtt---------tggtgaatatgaatgaccaaaattgtttt--tatgttggactgaacag
||||||||||||||| || ||| | || ||||| |||||||| || || |||||| |||||||||||||||||||||| || |||| ||| ||||||||||||||||  |||||| ||  |   ||  || || | || ||    ||||         ||   ||| |   |   | |||   ||||   |||||| |    ||||
GAATACAAATGGCTACAGCCTTGCGGTGGATATTTGGAGCTTAGGATGTACAATTCTTGAAATGGCAACATCAAAACCACCTTGGAGTCAATATGAAGGGgtgagattgtggatatttgggccatattttatagtagt-tatttttgttaaggtcaggtgtgaaatgttcgtagaccaaaccattttatcatgttgaatgtgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317547|gb|GR826531.1|GR826531
EST:     CAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGG                         GTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCC
genomic: CAATTATTGAAATGGCAACATCAAAACCTCCCTGGAATCAGTATGAAGGGgtgagatatt ... gactgaacagGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCC