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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGCAATCAAGCTTTCTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctcctaacttttatcccatgttttccaagtcacgttcatttgtttaggatttccttgtcatttggtgtacctgttatatgtgtgcctag

Basic information

species Glycine max
transcript GLYMA08G15340.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G014116_T02 (Zea mays), 5'ss of exon 8
TATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGCAATCAAGCTTTCTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctcctaacttttatcccatgttttccaag----tcacgttcatttgttt-aggatttccttgtcatttggtgtacctgttatatg-tgtgcctag---
| |||||||||||||| ||||| ||  ||||||| |||||||||||| |||||||| | ||  | | |||||| || || || || || ||||| |||| |||   |||      ||| |       | |   ||      || ||   ||| | | |    |  | | |  | |  |    |||| || || || |   |    
TCTGTTGGTACTTGGTGCTAGCACCTCATGATCCTATGCAATCAAGCCTTCTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacaatctgtatgttttcaaaattgatctaataataactccaggtgggtttatctcaatgatcacctattttcttttcctgctgtaatgtgatgggaaaaaaag

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G013750_T03 (Zea mays), 5'ss of exon 8
TATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGCAATCAAGCTTTCTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctcctaacttttatcccatgttttccaagtc-acgttcatttgttt--aggatttccttgtcatttggtgtacctgttatatgtgtgcctag-
| |||||||||||||| ||||| ||  ||||||| |||||||| ||| |||||||| | ||  | | |||||| || || || || || ||||| |||| |||   |    |   ||  |       | |   || || | | |   || | |  |  ||  | || |    || |||   ||| |  || | |   |  
TCTGTTGGTACTTGGTGCTAGCACCTCATGATCCTATGCAATCGAGCCTTCTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttgaatg-tttgcaaaatggatctcataactccaggctggcttatctcaataatcactttttttcctgttgtga-tgtgacgtgggggaaaaag

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 8
TATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGCAATCAAGCTTTCTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctcctaactttt-----atcccatgt---tttccaagtcacgttca-tttgtttagga-----tttccttgtcatttggtgtacctgttatatgtgtgcctag-----------------
| || ||||| || ||| |  | ||  |||| ||||||||||||||| |||| || |||||||||| |||||||||||| ||||| |||||||| |||| | ||||        |||||     ||| | |||   |||   |   || || | ||| ||    |     |||  |||| ||||| |     | || | | | |    |                  
TTTGCTGGTATTTAGTTTTGTCACCGCATGACCCAATGCAATCAAGCCTTCTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAGgcatgtctcttgtgctttttgtgcatctcctgtgggtttttcatctacatttaatttattctatacattcttttattgttatttgattctttttttttttttttaatcatttgttgtattatcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193639745|gb|FK593966.1|FK593966
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGTTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|9903102|gb|BE612070.1|BE612070
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|192296110|gb|FG989470.1|FG989470
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTCGAAACAGC
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGC
EST: gi|7640049|gb|AW734358.1|AW734358
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|151409280|gb|EV279088.1|EV279088
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|26057523|gb|CA800437.1|CA800437
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|21638863|gb|BM139909.1|BM139909
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|17022111|gb|BM093145.1|BM093145
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT