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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCTGTTGTGTCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatctctatttttttgtaagatgtggatattatactactcactattatatctaataataatactagaaagaattgttttttgttcctgcag

Basic information

species Glycine max
transcript GLYMA08G14970.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 8
ATTGGCTGTTGTGTCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagt---atctctatttttttgtaagatgtggatattatactactcactattatatctaataataatactagaaagaattgttttttgttcctgcag
 ||||| |||||  ||||||||||||| |||||||||||  |   ||||||||| ||||||||||||||||| |||||||||| ||| ||||||   |   |  || ||||   | | |     |  |   | |   |  ||| | || | ||||   ||  |          |     |  |  || |||
GTTGGCGGTTGTAGCAATGGCTGGACTTGCAGCAGAAGGCCTGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttctaacttccatttccctatcacgaa-gctttccacaaatccaactttgatctataatctcaactccctg-----cttcccatgttctcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13482453|gb|BG511796.1|BG511796
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|192316483|gb|FK006774.1|FK006774
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|11688004|gb|BF595680.1|BF595680
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|209700581|gb|BW670409.1|BW670409
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|192316482|gb|FK006773.1|FK006773
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|31306594|gb|CD391797.1|CD391797
EST:     TAACATATGACAAGGTGGTTGGTCCATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACCAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|27423772|gb|CA935292.1|CA935292
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|208281671|gb|GE078537.1|GE078537
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAA
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAA
EST: gi|105633459|gb|DW246822.1|DW246822
EST:     TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
EST: gi|22928559|gb|BU545698.1|BU545698
EST:     TAACATATGACAAGGTGGTTGGTCAANNNGCTGATCTTTTCAGTCTCCAG                         AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT
genomic: TAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatc ... gttcctgcagAGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGGCTGTTGTGTCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagtatctctatttttttgtaagatgtggatattatactactcactattatatctaataataatactagaaagaattgttttttgttcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT