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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacag

Basic information

species Glycine max
transcript GLYMA08G14670.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14670.2 (Glycine max), 5'ss of exon 8
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 6
CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacag
 |||||||||||||| || || || ||||| || |||||||||||  | |||||||| ||||| || |||||  ||||| | ||||||||||||   ||||||||   |  |||  |||   |   |    |||      ||  |   |||  |||||| | |  | ||   | | | |   || |    
TAACACTTGTGAGGACTCTCTCTTGGCTGCACCAATTATCTTGGATCTTGTCCTTCTCGCTGAACTCAGCACCAGAATCCAATTTAAAGCTGAAGGAGAGgtttgtattccgttagttagttaccaag--aaactcgagattggtgagtttttttttttcatgtttgaatctattctct---ttcag---

upper sequence: GLYMA08G14670.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 5'ss of exon 8
CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccatt---cattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctt-taacag
|||||||||||| || || || || |||||||| ||||| |||||| | || |||||||||||||| |  ||||| ||| |||| |    |||||| ||||||||| ||   ||||  || | ||    | | |||  | |||     |  || | ||  ||     ||  | |   ||  ||| || |  |||
CAACACTTGTGAAGACTCTCTCTTGGCTGCTCCAATTATTTTGGACCTTGTTCTTCTTGCTGAGCTCACTACTCGGATCCAGTTCATGAGTGAAAACGAGgtttgctattatttgcaaaatcgttagatagttcaatgtttatcc---aaattgatttagttgtgagcttgatt---ttcttggtttcttgcag

upper sequence: GLYMA08G14670.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaa--atgagtttatggctttaacag
|||||| || ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||| || ||| || | |||||||||   ||||| ||   | |  ||| |      | ||   | |||||   | |  | ||||   |   |  || | |   ||  | |  |   |||  |||
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatc----cttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605153|gb|DB982221.1|DB982221
EST:     TCCTTCTTGCTGAGCTTAGCTTTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|209707639|gb|BW683432.1|BW683432
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|10233961|gb|BE802849.1|BE802849
EST:     TACTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAACCTGAAAATGAG                         G-AAAGTTC-ACTCATTCCAC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCAC
EST: gi|14999986|gb|BI320800.1|BI320800
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|14206199|gb|BG839877.1|BG839877
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|10232086|gb|BE800974.1|BE800974
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|51337208|gb|CO981074.1|CO981074
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|20813067|gb|BQ297545.1|BQ297545
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|15287268|gb|BI471159.1|BI471159
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|10231637|gb|BE800525.1|BE800525
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|208185882|gb|GD985391.1|GD985391
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|213597145|gb|DB977639.1|DB977639
EST:     CTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: CTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|26058223|gb|CA801137.1|CA801137
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|6071287|gb|AW100674.1|AW100674
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|14195821|gb|BE657641.2|BE657641
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|26059654|gb|CA802568.1|CA802568
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|31310622|gb|CD395825.1|CD395825
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|214008105|gb|DB988492.1|DB988492
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|14259830|gb|BG882738.1|BG882738
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|15285683|gb|BI469574.1|BI469574
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120494127|gb|EH222294.1|EH222294
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGACAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120494362|gb|EH222529.1|EH222529
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|151403113|gb|EV272923.1|EV272923
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|17519636|gb|BM188678.1|BM188678
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|9259624|gb|BE347771.1|BE347771
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|10232107|gb|BE800995.1|BE800995
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|8402389|gb|BE058023.1|BE058023
EST:     TCCTTCTTGCTGAGCTGAGCACTCGAATCGAGTGTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGGTGCGACCATACTCAGTTACCTGACG
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGAC-
EST: gi|22523537|gb|BU082348.1|BU082348
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|213606697|gb|DB983772.1|DB983772
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|22525964|gb|BU084775.1|BU084775
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120528740|gb|EH256874.1|EH256874
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|12688466|gb|BG154802.1|BG154802
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|209726026|gb|BW654798.1|BW654798
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120493272|gb|EH221439.1|EH221439
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120492885|gb|EH221052.1|EH221052
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|209715601|gb|BW677196.1|BW677196
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|15204497|gb|BI427265.1|BI427265
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|14206213|gb|BG839891.1|BG839891
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|9901828|gb|BE610796.1|BE610796
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTACCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|20448975|gb|BQ253099.1|BQ253099
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|14011829|gb|BG726751.1|BG726751
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120492542|gb|EH220709.1|EH220709
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|10843347|gb|BF066650.1|BF066650
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA