1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacag
species | Glycine max |
transcript | GLYMA08G14670.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TACTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAACCTGAAAATGAG G-AAAGTTC-ACTCATTCCACEST: gi|120528737|gb|EH256871.1|EH256871
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCAC
EST: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCEST: gi|120528747|gb|EH256881.1|EH256881
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCEST: gi|20448975|gb|BQ253099.1|BQ253099
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCEST: gi|120494127|gb|EH222294.1|EH222294
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG GGACAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCEST: gi|14259830|gb|BG882738.1|BG882738
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCEST: gi|8402389|gb|BE058023.1|BE058023
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTCGAATCGAGTGTAAAGCTGAAAATGAG GGAAAGTTCCACTCATTCCACCCAGGTGCGACCATACTCAGTTACCTGACGEST: gi|15204497|gb|BI427265.1|BI427265
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGAC-
EST: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA