1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTCTGTTGGGATTACATTTTAGAGCTCCGGAGAATTTAAAGGCCTTAGTGGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacctcctctgatgttattttagaacatgatatgggattcttctttcaaaaattagtgattatagaaggcacctagcaatagcattcattagaat...
species | Glycine max |
transcript | GLYMA08G13450.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCCAGACTAATGCAGCCTCCACATAGCTTACCCTCTGAAGATG ATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAGEST: gi|17964406|gb|BM271141.1|BM271141
genomic: TCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacct ... gctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
EST: GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATG ATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAGEST: gi|51343270|gb|CO984003.1|CO984003
genomic: GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacct ... gctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
EST: GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATG ATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
genomic: GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacct ... gctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGTTGGGATTACATTTTAGAGCTCCGGAGAATTTAAAGGCCTTAGTGGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacctcctctgatgttattttagaacatgatatgggattcttctttcaaaaattagtgattatagaaggcacctagcaatagcattcattagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG