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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcgtaaccttcaactgactgaaacataagtctgaataatgaattcattggattctagttgtgtactaatgttactttagtaataagcatgtagc...

Basic information

species Glycine max
transcript GLYMA08G13370.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcgtaacc-ttcaactgactgaaacataagtctgaataat-gaattcattggat----tctagttgtgtacta-atgttactttagtaataagcatgtagc-----
   ||||| | || ||||| || ||||| |||||||| ||| | ||||||||||||||||||||| | ||  |||| || || || |   | || |||||||||||     ||  |||   |  ||  |    || | ||  |  | |  |||  |  ||    |    |||| || |  || || ||    |  ||  |   |        
GTCTAGTTCTGCTCTCAGCGGTAGTTGGTACAGGTGCACAGTTGGCGTTGCTGGTTCTTCTTGTCATATTAATGGCCATCGTGGGAACTCTCTACGTTGGgtatgtattacactattcttttctcttgagaccaattttgtgttgttgttttccctacatgcggttggcttgtatattggattttgctcacctcttattctaattatttcag

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 8
ACTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcg----taaccttcaactgactgaaac-ataagtctgaataatgaattcattggattc-tagttgtgtactaatgttactttagtaataagcatgtagc
|  | ||| |  ||||||||||||||||||| ||||||||||| ||  |||| ||||| |||||| || | ||||| ||| |||||||||||||| | ||||| | |       |||| | |    | ||||    |   | ||||  ||    ||  |  |||    ||| | |  | |||    |||| |  |  | |      
ATATGGTTTTATTTTCAGCTGTTGTTGGCACTGGTGCTCAGCTGGCCATGCTTGTTCTCCTTGTCATCATTTTGGCAATTATTGGGATGTTGTATATAGGgtacgagtagagccaaccatgataaaattgaacttgttgatatgaagcatatgatctctctattgactgttatttcttcatgcctttttatttgtttgaa------

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 8
ACTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcgtaaccttcaactgactgaaacataag-tctgaataatgaattcattggattctagttgtgtactaatgttactttagtaataagcatgtagc-
| |||||| | |||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||| ||||| |||||||  ||||||||| | |||||||| |  |||   | |   | || | |  | | |||  ||  || |    |||  ||  | |  ||   |    | | | || | ||  | ||| |   
ATTTAGTTCTACTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTAGCGTTGCTTGTTCTCCTTGTCATCTTATTGGCAATTGTTGCAATGTTGTATATCGGgtatgttcagaactaactatgaaatgtatcgaatgatctctattttggagctgttgtctttgaatgatgg--ttgcttcattataattattgggatggaagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7795427|gb|AW780752.1|AW780752
EST:     CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGG                         GCGAGGAGCCATCATCACTACTTTGATTGAGTGTTATGCTCTCACATATTA
genomic: CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcgt ... cttgtctcagGCGAGGAGCCATCATCACTACTTTCATTGTGTGTTATGCTCTCACATCTTT
EST: gi|207804041|gb|GD774106.1|GD774106
EST:     CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGG                         GCGAGGAGCCATCATCACTACTTTCATTGTGTGTTATGCTCTCACATCTTT
genomic: CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcgt ... cttgtctcagGCGAGGAGCCATCATCACTACTTTCATTGTGTGTTATGCTCTCACATCTTT