Sequence
atgc intronic sequence ATGC exonic sequenceAAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaaggaagatcaagctattcaaatcattttgtaaatttccatatctttgaacttcttcttcctaagtatattaacttcgtttttgatgtag
Basic information
species | Glycine max |
transcript | GLYMA08G13110.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 8
AAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaaggaagatcaagctattcaaatcattt--tgtaaatttccatatctttgaacttcttcttcctaagtatattaacttcgtttttgatgtag
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GAATTTTATCAGAGCCGAGGTACTTCCCAGTGGTTATCTGATTCGACCATGTGAGGGAGGTGGCTCCATGATTTACATTGTTGATCATGTTGATTTGGATgtaagtaacaatagtgttttcacattaactagtgtaatattgaatagttttgagatacatatct-------tattaatcctgtgtattttacag
upper sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 8
AAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaag--gaagatcaagctattcaaatc-attttgtaaatttccatatctttgaacttcttcttcctaagtatattaacttcgtttttgatgtag
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AAACTTTGTCAGAGCCGAGGTGCTTCCTAGCGGCTATTTGATCCGCCCATGTGAGGGGGGTGGTTCCATGATTCACATTGTGGATCATGTTGATTTGGATgtgagctgaagagacatttgtccccatccattttttggacactttggtc---aaatttgtggactcttagca-ataacatattttcttgttgcag
upper sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G423337_T01 (Zea mays), 5'ss of exon 1
AAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaaggaagatcaa-gctattcaaatcattttgtaaatttc---catatct---ttgaa------cttcttcttcctaagtatattaacttcgtttttgatgtag
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AAATTTTGTAAGAGCCGAAGTGCTTCCTAGTGGCTATCTAATTCGACCCTGTGAGGGAGGTGGCTCCATGATTCACATTGTGGATCATGTTGATTTAGATgtaagtggaatcaatattatcctatccattctgaaggctttaatcatatctggcttgaataaaaacttctgtgcttgcatcttatcaatcttaccatct-tgtag
upper sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 7
AAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaaggaagatcaagctattcaaatcattttgtaaatttcca--tatctttgaacttcttcttcctaagtatattaacttcgtttttgatgtag
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AAACTTTGTGAGAGCTGAAATGAAACCAAGCGGGTTTCTCATCCGTCCTTGCGATGGTGGTGGTTCCATTCTCCACATTGTTGATCATGTTGATCTGGATgtaagtgaca-------actcgaatcggttcataacacttcagttctctctttataatatgatcatgactttgttttttcggttttgcaag---
upper sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 8
AAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaagga--agatcaagctattcaaat-cattttgtaaatttccatatctttgaacttcttcttcctaagtatattaacttcgtttttgatgtag-----
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AAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCCGACCTTGTGAGGGTGGTGGCTCCATTATTCACATTGTTGATCATGTTGATTTGGATgtaaggataaaatctaattaagctacttcaggttctcaattatccaactgtggtttatttgttttgtttgtct-ttaatttatctatttgtatatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13478118|gb|BG507728.1|BG507728EST: GTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGAT GTTTGGAGTGTTCCTGAAGTACTTAGACCCCTCTATGAATCACCAAAATTC
genomic: GTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaaggaaga ... tttgatgtagGTTTGGAGTGTTCCTGAAGTACTTAGACCCCTCTATGAATCACCAAAATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTGTTCACATTGTTGATCATGTTGATTTAGATgtaaggaagatcaagctattcaaatcattttgtaaatttccatatctttgaacttcttcttcctaagtatattaacttcgtttttgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA